EnhancerDB
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  3. vista5416[chr1:228651177-228651630]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5416[chr1:228651177-228651630]
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Tissue distribution of vista5416
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Transcription factor that possibly regulate vista5416[chr1:228651177-228651630]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228651232 228652716 POLR2A UCSC Txn Factor no Conserved 107876997
chr1 228651390 228651600 NR2F2 UCSC Txn Factor no Conserved 107877023
chr1 228651502 228651791 CEBPB UCSC Txn Factor no Conserved 107877038
chr1 228651187 228651202 FOXA1 JASPAR yes 118473961
chr1 228651189 228651201 FOXC2 JASPAR yes 118473962
chr1 228651189 228651202 POU2F2 JASPAR yes 118473963
chr1 228651189 228651203 POU1F1 JASPAR yes 118473964
chr1 228651190 228651201 FOXB1 JASPAR yes 118473965
chr1 228651190 228651201 FOXC1 JASPAR yes 118473966
chr1 228651190 228651202 POU3F1 JASPAR yes 118473967
chr1 228651190 228651202 POU3F2 JASPAR yes 118473968
chr1 228651190 228651203 POU3F3 JASPAR yes 118473969
chr1 228651191 228651195 YY1 TRANSFAC yes 118473970
chr1 228651191 228651203 POU2F1 JASPAR yes 118473971
chr1 228651192 228651199 POU2F1 TRANSFAC yes 118473972
chr1 228651192 228651199 POU2F2C TRANSFAC yes 118473973
chr1 228651192 228651199 POU2F2 TRANSFAC yes 118473974
chr1 228651192 228651200 POU2F1 TRANSFAC yes 118473975
chr1 228651192 228651201 POU3F4 JASPAR yes 118473976
chr1 228651192 228651201 POU5F1B JASPAR yes 118473977
chr1 228651194 228651208 POU4F1 JASPAR yes 118473978
chr1 228651194 228651210 POU4F3 JASPAR yes 118473979
chr1 228651197 228651201 YY1 TRANSFAC yes 118473980
chr1 228651198 228651210 POU2F1 JASPAR yes 118473981
chr1 228651198 228651211 POU3F3 JASPAR yes 118473982
chr1 228651198 228651212 POU1F1 JASPAR yes 118473983
chr1 228651199 228651211 POU3F1 JASPAR yes 118473984
chr1 228651199 228651211 POU3F2 JASPAR yes 118473985
chr1 228651216 228651228 HNF1B JASPAR yes 118473986
chr1 228651251 228651255 YY1 TRANSFAC yes 118473987
chr1 228651253 228651267 E2F7 JASPAR yes 118473988
chr1 228651254 228651266 E2F8 JASPAR yes 118473989
chr1 228651274 228651292 SRF JASPAR yes 118473990
chr1 228651275 228651287 SRF JASPAR yes 118473991
chr1 228651278 228651288 ALX3 JASPAR yes 118473992
chr1 228651278 228651288 EN2 JASPAR yes 118473993
chr1 228651278 228651288 ESX1 JASPAR yes 118473994
chr1 228651278 228651288 GBX2 JASPAR yes 118473995
chr1 228651278 228651288 GSX1 JASPAR yes 118473996
chr1 228651278 228651288 GSX2 JASPAR yes 118473997
chr1 228651278 228651288 LBX2 JASPAR yes 118473998
chr1 228651278 228651288 LHX2 JASPAR yes 118473999
chr1 228651279 228651287 BARX1 JASPAR yes 118474000
chr1 228651279 228651287 BSX JASPAR yes 118474001
chr1 228651279 228651287 DLX6 JASPAR yes 118474002
chr1 228651279 228651287 ISX JASPAR yes 118474003
chr1 228651279 228651287 LBX1 JASPAR yes 118474004
chr1 228651279 228651287 LHX9 JASPAR yes 118474005
chr1 228651279 228651287 MSX1 JASPAR yes 118474006
chr1 228651279 228651287 MSX2 JASPAR yes 118474007
chr1 228651279 228651287 NKX6-2 JASPAR yes 118474008
chr1 228651279 228651287 PRRX1 JASPAR yes 118474009
chr1 228651279 228651287 RAX2 JASPAR yes 118474010
chr1 228651279 228651287 SHOX JASPAR yes 118474011
chr1 228651279 228651287 UNCX JASPAR yes 118474012
chr1 228651284 228651289 TFAP2A TRANSFAC yes 118474013
chr1 228651284 228651290 MZF1 JASPAR yes 118474014
chr1 228651290 228651308 MAFF JASPAR yes 118474015
chr1 228651292 228651307 MAFK JASPAR yes 118474016
chr1 228651301 228651315 GATA2 JASPAR yes 118474017
chr1 228651303 228651309 GATA1 TRANSFAC yes 118474018
chr1 228651303 228651311 GATA5 JASPAR yes 118474019
chr1 228651325 228651340 LEF1 JASPAR yes 118474020
chr1 228651326 228651340 TCF7L2 JASPAR yes 118474021
chr1 228651343 228651354 FLI1 JASPAR yes 118474022
chr1 228651344 228651352 EHF JASPAR yes 118474023
chr1 228651361 228651371 MSC JASPAR yes 118474024
chr1 228651420 228651435 RFX5 JASPAR yes 118474025
chr1 228651428 228651449 ZNF263 JASPAR yes 118474026
chr1 228651430 228651441 E2F6 JASPAR yes 118474027
chr1 228651435 228651441 PEA3 TRANSFAC yes 118474028
chr1 228651435 228651456 ZNF263 JASPAR yes 118474029
chr1 228651436 228651457 ZNF263 JASPAR yes 118474030
chr1 228651443 228651454 E2F1 JASPAR yes 118474031
chr1 228651444 228651449 SP1 TRANSFAC yes 118474032
chr1 228651444 228651455 E2F4 JASPAR yes 118474033
chr1 228651444 228651455 E2F6 JASPAR yes 118474034
chr1 228651445 228651450 SP1 TRANSFAC yes 118474035
chr1 228651473 228651478 SP1 TRANSFAC yes 118474036
chr1 228651490 228651493 MYB TRANSFAC yes 118474037
chr1 228651491 228651511 RREB1 JASPAR yes 118474038
chr1 228651494 228651514 RREB1 JASPAR yes 118474039
chr1 228651498 228651512 RXRB JASPAR yes 118474040
chr1 228651498 228651512 RXRG JASPAR yes 118474041
chr1 228651498 228651513 NR2C2 JASPAR yes 118474042
chr1 228651540 228651559 CTCF JASPAR yes 35914140
chr1 228651540 228651559 CTCF JASPAR yes 118474043
chr1 228651558 228651565 SP1 TRANSFAC yes 35914141
chr1 228651558 228651565 SP1 TRANSFAC yes 118474044
chr1 228651558 228651568 SP1 JASPAR yes 35914142
chr1 228651558 228651568 SP1 JASPAR yes 118474045
chr1 228651559 228651567 SP1 TRANSFAC yes 35914143
chr1 228651559 228651567 SP1 TRANSFAC yes 118474046
chr1 228651559 228651568 SP1 TRANSFAC yes 35914144
chr1 228651559 228651568 SP1 TRANSFAC yes 118474047
chr1 228651559 228651569 SP1 JASPAR yes 35914145
chr1 228651559 228651569 SP1 JASPAR yes 118474048
chr1 228651560 228651565 SP1 TRANSFAC yes 35914146
chr1 228651560 228651565 SP1 TRANSFAC yes 118474049
chr1 228651560 228651571 E2F4 JASPAR yes 35914147
chr1 228651560 228651571 E2F4 JASPAR yes 118474050
chr1 228651561 228651566 SP1 TRANSFAC yes 35914148
chr1 228651561 228651566 SP1 TRANSFAC yes 118474051
chr1 228651561 228651567 SP1 TRANSFAC yes 35914149
chr1 228651561 228651567 SP1 TRANSFAC yes 118474052
chr1 228651562 228651574 HINFP JASPAR yes 35914150
chr1 228651562 228651574 HINFP JASPAR yes 118474053
chr1 228651563 228651577 CREB3 JASPAR yes 35914151
chr1 228651563 228651577 CREB3L1 JASPAR yes 35914152
chr1 228651563 228651577 CREB3 JASPAR yes 118474054
chr1 228651563 228651577 CREB3L1 JASPAR yes 118474055
chr1 228651564 228651578 XBP1 JASPAR yes 35914153
chr1 228651564 228651578 XBP1 JASPAR yes 118474056
chr1 228651571 228651588 NR3C1 JASPAR yes 35914154
chr1 228651571 228651588 NR3C2 JASPAR yes 35914155
chr1 228651571 228651588 NR3C1 JASPAR yes 118474057
chr1 228651571 228651588 NR3C2 JASPAR yes 118474058
chr1 228651603 228651614 E2F4 JASPAR yes 35914156
chr1 228651603 228651614 E2F4 JASPAR yes 118474059
chr1 228651604 228651615 E2F1 JASPAR yes 35914157
chr1 228651604 228651615 E2F1 JASPAR yes 118474060
chr1 228651620 228651635 RUNX2 JASPAR yes 35914158
chr1 228651620 228651635 RUNX2 JASPAR yes 118474061
SNP sites on vista5416[chr1:228651177-228651630]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228651181 rs72763956 A T no 1002788
chr1 228651234 rs148388476 T TAC
POLR2A
1002789
chr1 228651234 rs397699684 T TAC
POLR2A
1002790
chr1 228651234 rs781639993 T TAC
POLR2A
1002791
chr1 228651270 rs79241880 C T
POLR2A
1002792
chr1 228651284 rs113921176 T C
ALX3 BARX1 BSX DLX6 EN2 ESX1 GBX2 GSX1 GSX2 ISX LBX1 LBX2 LHX2 LHX9 MSX1 MSX2 MZF1 NKX6-2 POLR2A PRRX1 RAX2 SHOX SRF TFAP2A UNCX
1002793
chr1 228651354 rs189619513 G A
FLI1 POLR2A
1002794
chr1 228651422 rs371503544 T C
NR2F2 POLR2A RFX5
1002795
chr1 228651457 rs1007686 A G
NR2F2 POLR2A ZNF263
1002796
chr1 228651617 rs6665342 G A
CEBPB POLR2A
1002797
Genes possibly regulated by vista5416[chr1:228651177-228651630]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228581374 228594541 - TRIM11 ENSG00000154370.9 228594541 0.68 1.0 1921 43364
chr1 228595641 228604562 - TRIM17 ENSG00000162931.7 228604562 0.89 1.0 1922 53385
chr1 228612546 228613026 - HIST3H3 ENSG00000168148.3 228613026 0.84 0.89 1923 61849
chr1 228645065 228645560 - HIST3H2A ENSG00000181218.4 228645560 0.89 0.99 1924 94383
chr1 228645808 228646259 + HIST3H2BB ENSG00000196890.3 228645808 0.92 0.96 1925 94631
chr1 228674762 228683467 + RNF187 ENSG00000168159.9 228674762 0.68 1.0 1926 76868
Expression level of Genes
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miRNAs possibly regulated by vista5416[chr1:228651177-228651630]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results