EnhancerDB
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  3. vista5454[chr1:229307664-229307899]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5454[chr1:229307664-229307899]
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Tissue distribution of vista5454
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Transcription factor that possibly regulate vista5454[chr1:229307664-229307899]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 229307668 229307683 FOXP1 JASPAR yes 35969724
chr1 229307668 229307683 FOXP1 JASPAR yes 118475577
chr1 229307670 229307685 LEF1 JASPAR yes 35969725
chr1 229307670 229307685 LEF1 JASPAR yes 118475578
chr1 229307671 229307685 TCF7L2 JASPAR yes 35969726
chr1 229307671 229307685 TCF7L2 JASPAR yes 118475579
chr1 229307685 229307693 FOXL1 JASPAR yes 35969727
chr1 229307685 229307693 FOXL1 JASPAR yes 118475580
chr1 229307711 229307729 IRF2 JASPAR yes 35969728
chr1 229307711 229307729 IRF2 JASPAR yes 118475581
chr1 229307713 229307727 NR2F1 JASPAR yes 35969729
chr1 229307713 229307727 NR2F1 JASPAR yes 118475582
chr1 229307744 229307753 SNAI2 JASPAR yes 35969730
chr1 229307744 229307753 SNAI2 JASPAR yes 118475583
chr1 229307744 229307754 FIGLA JASPAR yes 35969731
chr1 229307744 229307754 TCF4 JASPAR yes 35969732
chr1 229307744 229307754 FIGLA JASPAR yes 118475584
chr1 229307744 229307754 TCF4 JASPAR yes 118475585
chr1 229307746 229307755 ZEB1 JASPAR yes 35969733
chr1 229307746 229307755 ZEB1 JASPAR yes 118475586
chr1 229307748 229307753 SP1 TRANSFAC yes 35969734
chr1 229307748 229307753 SP1 TRANSFAC yes 118475587
chr1 229307751 229307755 LFA1 TRANSFAC yes 35969735
chr1 229307751 229307755 LFA1 TRANSFAC yes 118475588
chr1 229307808 229307819 FOXH1 JASPAR yes 35969736
chr1 229307808 229307819 FOXH1 JASPAR yes 118475589
chr1 229307817 229307821 H4TF2 TRANSFAC yes 35969737
chr1 229307817 229307821 H4TF2 TRANSFAC yes 118475590
chr1 229307832 229307842 NFIA JASPAR yes 35969738
chr1 229307832 229307842 NFIA JASPAR yes 118475591
chr1 229307834 229307840 NFIC JASPAR yes 35969739
chr1 229307834 229307840 NFIC JASPAR yes 118475592
chr1 229307844 229307853 SNAI2 JASPAR yes 35969740
chr1 229307844 229307853 SNAI2 JASPAR yes 118475593
chr1 229307844 229307854 ID4 JASPAR yes 35969741
chr1 229307844 229307854 TCF3 JASPAR yes 35969742
chr1 229307844 229307854 TCF4 JASPAR yes 35969743
chr1 229307844 229307854 ID4 JASPAR yes 118475594
chr1 229307844 229307854 TCF3 JASPAR yes 118475595
chr1 229307844 229307854 TCF4 JASPAR yes 118475596
chr1 229307850 229307865 SOX21 JASPAR yes 35969744
chr1 229307850 229307865 SOX21 JASPAR yes 118475597
chr1 229307850 229307866 SOX4 JASPAR yes 35969745
chr1 229307850 229307866 SOX4 JASPAR yes 118475598
chr1 229307857 229307866 SOX9 JASPAR yes 35969746
chr1 229307857 229307866 SOX9 JASPAR yes 118475599
chr1 229307859 229307874 RFX5 JASPAR yes 35969747
chr1 229307859 229307874 RFX5 JASPAR yes 118475600
chr1 229307861 229307877 RFX2 JASPAR yes 35969748
chr1 229307861 229307877 RFX3 JASPAR yes 35969749
chr1 229307861 229307877 RFX4 JASPAR yes 35969750
chr1 229307861 229307877 RFX5 JASPAR yes 35969751
chr1 229307861 229307877 RFX2 JASPAR yes 118475601
chr1 229307861 229307877 RFX3 JASPAR yes 118475602
chr1 229307861 229307877 RFX4 JASPAR yes 118475603
chr1 229307861 229307877 RFX5 JASPAR yes 118475604
chr1 229307862 229307881 RFX2 JASPAR yes 35969752
chr1 229307862 229307881 RFX2 JASPAR yes 118475605
chr1 229307864 229307879 RFX5 JASPAR yes 35969753
chr1 229307864 229307879 RFX5 JASPAR yes 118475606
chr1 229307872 229307884 PKNOX2 JASPAR yes 35969754
chr1 229307872 229307884 PKNOX2 JASPAR yes 118475607
chr1 229307885 229307891 HiNF-A TRANSFAC yes 35969755
chr1 229307885 229307891 HiNF-A TRANSFAC yes 118475608
chr1 229307885 229307900 FOXP1 JASPAR yes 35969756
chr1 229307885 229307900 FOXP1 JASPAR yes 118475609
chr1 229307892 229307898 HiNF-A TRANSFAC yes 35969757
chr1 229307892 229307898 HiNF-A TRANSFAC yes 118475610
chr1 229307899 229307909 RELA JASPAR yes 35969758
chr1 229307899 229307909 RELA JASPAR yes 118475611
chr1 229307899 229307917 MAFF JASPAR yes 35969759
chr1 229307899 229307917 MAFF JASPAR yes 118475612
SNP sites on vista5454[chr1:229307664-229307899]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 229307738 rs76794858 C T no 1008814
chr1 229307851 rs530525253 T G
ID4 SNAI2 SOX21 SOX4 TCF3 TCF4
1008815
chr1 229307874 rs538511096 G A
PKNOX2 RFX2 RFX3 RFX4 RFX5
1008816
Genes possibly regulated by vista5454[chr1:229307664-229307899]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 229385383 229387557 + TMEM78 ENSG00000177800.2 229385383 0.93 0.96 1928 22516
chr1 229406822 229441641 + RAB4A ENSG00000168118.7 229406822 0.61 1.0 1929 1077
Expression level of Genes
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miRNAs possibly regulated by vista5454[chr1:229307664-229307899]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results