EnhancerDB
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  3. vista5456[chr1:229327236-229327413]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5456[chr1:229327236-229327413]
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Tissue distribution of vista5456
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Transcription factor that possibly regulate vista5456[chr1:229327236-229327413]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 229327221 229327240 PAX5 JASPAR yes 35971962
chr1 229327221 229327240 PAX5 JASPAR yes 118475665
chr1 229327228 229327238 TBX21 JASPAR yes 35971963
chr1 229327228 229327238 TBX21 JASPAR yes 118475666
chr1 229327228 229327239 TBX20 JASPAR yes 35971964
chr1 229327228 229327239 TBX2 JASPAR yes 35971965
chr1 229327228 229327239 TBX20 JASPAR yes 118475667
chr1 229327228 229327239 TBX2 JASPAR yes 118475668
chr1 229327228 229327241 EOMES JASPAR yes 35971966
chr1 229327228 229327241 EOMES JASPAR yes 118475669
chr1 229327229 229327237 MGA JASPAR yes 35971967
chr1 229327229 229327237 MGA JASPAR yes 118475670
chr1 229327229 229327239 TBR1 JASPAR yes 35971968
chr1 229327229 229327239 TBR1 JASPAR yes 118475671
chr1 229327235 229327250 RUNX2 JASPAR yes 35971969
chr1 229327235 229327250 RUNX2 JASPAR yes 118475672
chr1 229327236 229327245 RUNX2 JASPAR yes 35971970
chr1 229327236 229327245 RUNX2 JASPAR yes 118475673
chr1 229327236 229327246 RUNX3 JASPAR yes 35971971
chr1 229327236 229327246 RUNX3 JASPAR yes 118475674
chr1 229327262 229327268 HiNF-A TRANSFAC yes 35971972
chr1 229327262 229327268 HiNF-A TRANSFAC yes 118475675
chr1 229327278 229327296 MAFF JASPAR yes 35971973
chr1 229327278 229327296 MAFF JASPAR yes 118475676
chr1 229327280 229327291 NRL JASPAR yes 35971974
chr1 229327280 229327291 NRL JASPAR yes 118475677
chr1 229327280 229327295 MAFK JASPAR yes 35971975
chr1 229327280 229327295 MAFK JASPAR yes 118475678
chr1 229327287 229327293 JUN TRANSFAC yes 35971976
chr1 229327287 229327293 JUN TRANSFAC yes 118475679
chr1 229327288 229327309 IRF1 JASPAR yes 35971977
chr1 229327288 229327309 IRF1 JASPAR yes 118475680
chr1 229327291 229327297 TBP TRANSFAC yes 35971978
chr1 229327291 229327297 TBP TRANSFAC yes 118475681
chr1 229327292 229327306 STAT1 JASPAR yes 35971979
chr1 229327292 229327306 STAT1 JASPAR yes 118475682
chr1 229327292 229327307 STAT2 JASPAR yes 35971980
chr1 229327292 229327307 STAT2 JASPAR yes 118475683
chr1 229327296 229327301 ETS2 TRANSFAC yes 35971981
chr1 229327296 229327301 ETS2 TRANSFAC yes 118475684
chr1 229327322 229327326 YY1 TRANSFAC yes 35971982
chr1 229327322 229327326 YY1 TRANSFAC yes 118475685
chr1 229327324 229327339 MEF2A JASPAR yes 35971983
chr1 229327324 229327339 MEF2A JASPAR yes 118475686
chr1 229327325 229327340 MEF2C JASPAR yes 35971984
chr1 229327325 229327340 MEF2C JASPAR yes 118475687
chr1 229327327 229327337 MEF2A JASPAR yes 35971985
chr1 229327327 229327337 MEF2A JASPAR yes 118475688
chr1 229327328 229327332 YY1 TRANSFAC yes 35971986
chr1 229327328 229327332 YY1 TRANSFAC yes 118475689
chr1 229327330 229327342 POU2F1 JASPAR yes 35971987
chr1 229327330 229327342 POU2F1 JASPAR yes 118475690
chr1 229327330 229327343 POU3F3 JASPAR yes 35971988
chr1 229327330 229327343 POU3F3 JASPAR yes 118475691
chr1 229327330 229327344 POU1F1 JASPAR yes 35971989
chr1 229327330 229327344 POU1F1 JASPAR yes 118475692
chr1 229327331 229327343 POU3F1 JASPAR yes 35971990
chr1 229327331 229327343 POU3F2 JASPAR yes 35971991
chr1 229327331 229327343 POU3F1 JASPAR yes 118475693
chr1 229327331 229327343 POU3F2 JASPAR yes 118475694
chr1 229327331 229327344 POU2F2 JASPAR yes 35971992
chr1 229327331 229327344 POU2F2 JASPAR yes 118475695
chr1 229327332 229327340 FOXL1 JASPAR yes 35971993
chr1 229327332 229327340 FOXL1 JASPAR yes 118475696
chr1 229327332 229327341 POU3F4 JASPAR yes 35971994
chr1 229327332 229327341 POU5F1B JASPAR yes 35971995
chr1 229327332 229327341 POU3F4 JASPAR yes 118475697
chr1 229327332 229327341 POU5F1B JASPAR yes 118475698
chr1 229327339 229327344 MYB TRANSFAC yes 35971996
chr1 229327339 229327344 MYB TRANSFAC yes 118475699
chr1 229327344 229327364 RREB1 JASPAR yes 35971997
chr1 229327344 229327364 RREB1 JASPAR yes 118475700
chr1 229327376 229327380 TEAD2 TRANSFAC yes 35971998
chr1 229327376 229327380 TEAD2 TRANSFAC yes 118475701
chr1 229327376 229327381 TBP TRANSFAC yes 35971999
chr1 229327376 229327381 TBP TRANSFAC yes 118475702
chr1 229327376 229327382 TFIID TRANSFAC yes 35972000
chr1 229327376 229327382 TFIID TRANSFAC yes 118475703
chr1 229327380 229327396 SOX8 JASPAR yes 35972001
chr1 229327380 229327396 SOX8 JASPAR yes 118475704
chr1 229327382 229327394 FOXI1 JASPAR yes 35972002
chr1 229327382 229327394 FOXI1 JASPAR yes 118475705
chr1 229327385 229327389 YY1 TRANSFAC yes 35972003
chr1 229327385 229327389 YY1 TRANSFAC yes 118475706
chr1 229327385 229327395 HOXA13 JASPAR yes 35972004
chr1 229327385 229327395 HOXA13 JASPAR yes 118475707
chr1 229327385 229327396 HOXA10 JASPAR yes 35972005
chr1 229327385 229327396 HOXA10 JASPAR yes 118475708
chr1 229327386 229327397 CDX2 JASPAR yes 35972006
chr1 229327386 229327397 CDX2 JASPAR yes 118475709
chr1 229327388 229327409 IRF1 JASPAR yes 35972007
chr1 229327388 229327409 IRF1 JASPAR yes 118475710
chr1 229327390 229327411 IRF1 JASPAR yes 35972008
chr1 229327390 229327411 IRF1 JASPAR yes 118475711
chr1 229327391 229327406 FOXP1 JASPAR yes 35972009
chr1 229327391 229327406 FOXP1 JASPAR yes 118475712
chr1 229327393 229327408 FOXP1 JASPAR yes 35972010
chr1 229327393 229327408 FOXP1 JASPAR yes 118475713
chr1 229327395 229327410 FOXP1 JASPAR yes 35972011
chr1 229327395 229327410 FOXP1 JASPAR yes 118475714
chr1 229327396 229327411 FOXP1 JASPAR yes 35972012
chr1 229327396 229327411 FOXP1 JASPAR yes 118475715
chr1 229327397 229327412 FOXP1 JASPAR yes 35972013
chr1 229327397 229327412 FOXP1 JASPAR yes 118475716
chr1 229327398 229327413 FOXP1 JASPAR yes 35972014
chr1 229327398 229327413 FOXP1 JASPAR yes 118475717
chr1 229327399 229327414 FOXP1 JASPAR yes 35972015
chr1 229327399 229327414 FOXP1 JASPAR yes 118475718
SNP sites on vista5456[chr1:229327236-229327413]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 229327363 rs1396897 C T
RREB1
1009028
chr1 229327369 rs191297144 A G no 1009029
chr1 229327396 rs34831393 C CT
CDX2 FOXP1 HOXA10 IRF1 SOX8
1009030
chr1 229327396 rs537914026 C CT
CDX2 FOXP1 HOXA10 IRF1 SOX8
1009031
Genes possibly regulated by vista5456[chr1:229327236-229327413]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 229385383 229387557 + TMEM78 ENSG00000177800.2 229385383 0.93 0.96 1928 42030
chr1 229406822 229441641 + RAB4A ENSG00000168118.7 229406822 0.61 1.0 1929 20591
Expression level of Genes
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miRNAs possibly regulated by vista5456[chr1:229327236-229327413]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results