EnhancerDB
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  3. vista546[chr1:17253207-17253541]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista546[chr1:17253207-17253541]
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Tissue distribution of vista546
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Transcription factor that possibly regulate vista546[chr1:17253207-17253541]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 17253195 17253207 NHLH1 JASPAR yes 27065824
chr1 17253195 17253207 NHLH1 JASPAR yes 118239995
chr1 17253202 17253223 ZNF263 JASPAR yes 27065826
chr1 17253202 17253223 ZNF263 JASPAR yes 118239996
chr1 17253213 17253224 E2F6 JASPAR yes 27065827
chr1 17253213 17253224 E2F6 JASPAR yes 118239997
chr1 17253216 17253225 SP1 TRANSFAC yes 27065828
chr1 17253216 17253225 SP1 TRANSFAC yes 118239998
chr1 17253223 17253227 ESR1 TRANSFAC yes 27065829
chr1 17253223 17253227 ESR1 TRANSFAC yes 118239999
chr1 17253224 17253243 PAX5 JASPAR yes 27065830
chr1 17253224 17253243 PAX5 JASPAR yes 118240000
chr1 17253253 17253264 EBF1 JASPAR yes 27065831
chr1 17253253 17253264 EBF1 JASPAR yes 118240001
chr1 17253269 17253285 RFX2 JASPAR yes 27065832
chr1 17253269 17253285 RFX3 JASPAR yes 27065833
chr1 17253269 17253285 RFX4 JASPAR yes 27065834
chr1 17253269 17253285 RFX5 JASPAR yes 27065835
chr1 17253269 17253285 RFX2 JASPAR yes 118240002
chr1 17253269 17253285 RFX3 JASPAR yes 118240003
chr1 17253269 17253285 RFX4 JASPAR yes 118240004
chr1 17253269 17253285 RFX5 JASPAR yes 118240005
chr1 17253270 17253289 RFX2 JASPAR yes 27065836
chr1 17253270 17253289 RFX2 JASPAR yes 118240006
chr1 17253272 17253287 RFX5 JASPAR yes 27065837
chr1 17253272 17253287 RFX5 JASPAR yes 118240007
chr1 17253297 17253302 MYB TRANSFAC yes 27065838
chr1 17253297 17253302 MYB TRANSFAC yes 118240008
chr1 17253300 17253311 YY2 JASPAR yes 27065839
chr1 17253300 17253311 YY2 JASPAR yes 118240009
chr1 17253304 17253319 NR2C2 JASPAR yes 27065840
chr1 17253304 17253319 NR2C2 JASPAR yes 118240010
chr1 17253311 17253320 THAP1 JASPAR yes 27065841
chr1 17253311 17253320 THAP1 JASPAR yes 118240011
chr1 17253314 17253318 LFA1 TRANSFAC yes 27065842
chr1 17253314 17253318 LFA1 TRANSFAC yes 118240012
chr1 17253317 17253336 RFX2 JASPAR yes 27065843
chr1 17253317 17253336 RFX2 JASPAR yes 118240013
chr1 17253319 17253334 RFX5 JASPAR yes 27065844
chr1 17253319 17253334 RFX5 JASPAR yes 118240014
chr1 17253320 17253325 MYC TRANSFAC yes 27065845
chr1 17253320 17253325 MYC TRANSFAC yes 118240015
chr1 17253327 17253347 PPARG JASPAR yes 27065846
chr1 17253327 17253347 PPARG JASPAR yes 118240016
chr1 17253342 17253357 LEF1 JASPAR yes 27065847
chr1 17253342 17253357 LEF1 JASPAR yes 118240017
chr1 17253343 17253357 TCF7L2 JASPAR yes 27065848
chr1 17253343 17253357 TCF7L2 JASPAR yes 118240018
chr1 17253355 17253369 TLX1 JASPAR yes 27065849
chr1 17253355 17253369 TLX1 JASPAR yes 118240019
chr1 17253372 17253386 SPIC JASPAR yes 27065850
chr1 17253372 17253386 SPIC JASPAR yes 118240020
chr1 17253388 17253403 PRDM1 JASPAR yes 27065851
chr1 17253388 17253403 PRDM1 JASPAR yes 118240021
chr1 17253390 17253411 IRF1 JASPAR yes 27065852
chr1 17253390 17253411 IRF1 JASPAR yes 118240022
chr1 17253394 17253409 PRDM1 JASPAR yes 27065853
chr1 17253394 17253409 PRDM1 JASPAR yes 118240023
chr1 17253394 17253412 IRF2 JASPAR yes 27065854
chr1 17253394 17253412 IRF2 JASPAR yes 118240024
chr1 17253395 17253407 IRF1 JASPAR yes 27065855
chr1 17253395 17253407 IRF1 JASPAR yes 118240025
chr1 17253398 17253403 MYB TRANSFAC yes 27065856
chr1 17253398 17253403 MYB TRANSFAC yes 118240026
chr1 17253411 17253425 MTF1 JASPAR yes 27065857
chr1 17253411 17253425 MTF1 JASPAR yes 118240027
chr1 17253431 17253451 RREB1 JASPAR yes 27065858
chr1 17253431 17253451 RREB1 JASPAR yes 118240028
chr1 17253443 17253451 TBX5 JASPAR yes 27065859
chr1 17253443 17253451 TBX5 JASPAR yes 118240029
chr1 17253458 17253479 REST JASPAR yes 27065860
chr1 17253458 17253479 REST JASPAR yes 118240030
chr1 17253459 17253478 REST JASPAR yes 27065861
chr1 17253459 17253478 REST JASPAR yes 118240031
chr1 17253483 17253493 SP1 JASPAR yes 27065862
chr1 17253483 17253493 SP1 JASPAR yes 118240032
chr1 17253483 17253504 ZNF263 JASPAR yes 27065863
chr1 17253483 17253504 ZNF263 JASPAR yes 118240033
chr1 17253486 17253496 MZF1 JASPAR yes 27065864
chr1 17253486 17253496 MZF1 JASPAR yes 118240034
chr1 17253489 17253499 SP1 JASPAR yes 27065865
chr1 17253489 17253499 SP1 JASPAR yes 118240035
chr1 17253541 17253553 NHLH1 JASPAR yes 27065866
chr1 17253541 17253553 NHLH1 JASPAR yes 118240036
SNP sites on vista546[chr1:17253207-17253541]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 17253270 rs57231512 C T
RFX2 RFX3 RFX4 RFX5
114937
chr1 17253274 rs144823030 T A
RFX2 RFX3 RFX4 RFX5
114938
chr1 17253316 rs201119031 G A
LFA1 NR2C2 THAP1
114939
chr1 17253383 rs532728964 T C
SPIC
114940
chr1 17253407 rs111815510 G A
IRF1 IRF2 PRDM1
114941
chr1 17253421 rs34438479 G A
MTF1
114942
chr1 17253453 rs536996686 C T no 114943
chr1 17253481 rs141855776 A G no 114944
Genes possibly regulated by vista546[chr1:17253207-17253541]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 17300997 17307330 - MFAP2 ENSG00000117122.9 17307330 0.89 1.0 238 46211
chr1 17312453 17338423 - ATP13A2 ENSG00000159363.13 17338423 0.65 1.0 239 15118
Expression level of Genes
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miRNAs possibly regulated by vista546[chr1:17253207-17253541]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results