EnhancerDB
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  3. vista5467[chr1:229409656-229409997]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5467[chr1:229409656-229409997]
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Tissue distribution of vista5467
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Transcription factor that possibly regulate vista5467[chr1:229409656-229409997]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 229409522 229409855 FOXA1 UCSC Txn Factor no Conserved 107878101
chr1 229409526 229409827 FOXA2 UCSC Txn Factor no Conserved 107878103
chr1 229409583 229409825 EP300 UCSC Txn Factor no Conserved 107878113
chr1 229409672 229409677 ETS2 TRANSFAC yes 118476280
chr1 229409672 229409682 TEAD1 JASPAR yes 118476281
chr1 229409672 229409682 TEAD4 JASPAR yes 118476282
chr1 229409673 229409681 TEAD3 JASPAR yes 118476283
chr1 229409674 229409689 FOXA1 JASPAR yes 118476284
chr1 229409676 229409688 FOXC2 JASPAR yes 118476285
chr1 229409677 229409688 FOXC1 JASPAR yes 118476286
chr1 229409678 229409689 FOXA1 JASPAR yes 118476287
chr1 229409686 229409689 MYB TRANSFAC yes 118476288
chr1 229409686 229409700 NR2F1 JASPAR yes 118476289
chr1 229409686 229409700 RXRB JASPAR yes 118476290
chr1 229409686 229409700 RXRG JASPAR yes 118476291
chr1 229409686 229409701 HNF4G JASPAR yes 118476292
chr1 229409686 229409701 NR2C2 JASPAR yes 118476293
chr1 229409697 229409711 TCF7L2 JASPAR yes 118476294
chr1 229409700 229409706 LEF1 TRANSFAC yes 118476295
chr1 229409700 229409706 SOX10 JASPAR yes 118476296
chr1 229409712 229409727 FOXA1 JASPAR yes 118476297
chr1 229409716 229409720 YY1 TRANSFAC yes 118476298
chr1 229409716 229409727 FOXA1 JASPAR yes 118476299
chr1 229409751 229409758 MEIS1 JASPAR yes 118476300
chr1 229409751 229409759 MEIS2 JASPAR yes 118476301
chr1 229409778 229409799 IRF1 JASPAR yes 118476302
chr1 229409780 229409795 STAT2 JASPAR yes 118476303
chr1 229409782 229409797 IRF9 JASPAR yes 118476304
chr1 229409784 229409805 IRF1 JASPAR yes 118476305
chr1 229409785 229409791 TCF4 TRANSFAC yes 118476306
chr1 229409785 229409806 IRF1 JASPAR yes 118476307
chr1 229409786 229409801 PRDM1 JASPAR yes 118476308
chr1 229409786 229409801 STAT2 JASPAR yes 118476309
chr1 229409787 229409801 STAT1 JASPAR yes 118476310
chr1 229409788 229409802 SPIC JASPAR yes 118476311
chr1 229409790 229409811 IRF1 JASPAR yes 118476312
chr1 229409791 229409812 IRF1 JASPAR yes 118476313
chr1 229409792 229409807 PRDM1 JASPAR yes 118476314
chr1 229409792 229409813 IRF1 JASPAR yes 118476315
chr1 229409793 229409814 IRF1 JASPAR yes 118476316
chr1 229409794 229409809 FOXP1 JASPAR yes 118476317
chr1 229409794 229409815 IRF1 JASPAR yes 118476318
chr1 229409795 229409810 FOXP1 JASPAR yes 118476319
chr1 229409795 229409816 IRF1 JASPAR yes 118476320
chr1 229409796 229409811 FOXP1 JASPAR yes 118476321
chr1 229409796 229409817 IRF1 JASPAR yes 118476322
chr1 229409797 229409812 FOXP1 JASPAR yes 118476323
chr1 229409797 229409818 IRF1 JASPAR yes 118476324
chr1 229409798 229409813 FOXP1 JASPAR yes 118476325
chr1 229409799 229409814 FOXP1 JASPAR yes 118476326
chr1 229409800 229409815 FOXP1 JASPAR yes 118476327
chr1 229409801 229409816 FOXP1 JASPAR yes 118476328
chr1 229409802 229409817 FOXP1 JASPAR yes 118476329
chr1 229409803 229409818 FOXP1 JASPAR yes 118476330
chr1 229409804 229409819 FOXP1 JASPAR yes 118476331
chr1 229409805 229409820 FOXP1 JASPAR yes 118476332
chr1 229409829 229409840 NFE2L2 JASPAR yes 118476333
chr1 229409833 229409837 NFE TRANSFAC yes 118476334
chr1 229409866 229409880 TLX1 JASPAR yes 118476335
chr1 229409870 229409891 ZNF263 JASPAR yes 118476336
chr1 229409888 229409894 MZF1 JASPAR yes 118476337
chr1 229409908 229409918 NKX2-3 JASPAR yes 118476338
chr1 229409908 229409922 PLAG1 JASPAR yes 118476339
chr1 229409909 229409918 NKX2-8 JASPAR yes 118476340
chr1 229409931 229409943 ZBTB7A JASPAR yes 118476341
chr1 229409933 229409948 SCRT1 JASPAR yes 118476342
chr1 229409937 229409946 SNAI2 JASPAR yes 118476343
chr1 229409937 229409947 ID4 JASPAR yes 118476344
chr1 229409937 229409947 TCF3 JASPAR yes 118476345
chr1 229409937 229409947 TCF4 JASPAR yes 118476346
chr1 229409952 229409960 TBX5 JASPAR yes 118476347
chr1 229409952 229409961 ZEB1 JASPAR yes 118476348
chr1 229409952 229409965 ZBTB18 JASPAR yes 118476349
chr1 229409953 229409963 ID4 JASPAR yes 118476350
chr1 229409953 229409963 TCF3 JASPAR yes 118476351
chr1 229409953 229409963 TCF4 JASPAR yes 118476352
chr1 229409955 229409960 USF2 TRANSFAC yes 118476353
chr1 229409960 229409981 IRF1 JASPAR yes 118476354
chr1 229409961 229409982 IRF1 JASPAR yes 118476355
chr1 229409965 229409980 FOXP1 JASPAR yes 118476356
chr1 229409966 229409981 FOXP1 JASPAR yes 118476357
chr1 229409966 229409987 IRF1 JASPAR yes 118476358
chr1 229409967 229409982 FOXP1 JASPAR yes 118476359
chr1 229409967 229409988 IRF1 JASPAR yes 118476360
chr1 229409968 229409983 FOXP1 JASPAR yes 118476361
chr1 229409969 229409984 FOXP1 JASPAR yes 118476362
chr1 229409970 229409985 FOXP1 JASPAR yes 118476363
chr1 229409972 229409993 IRF1 JASPAR yes 118476364
SNP sites on vista5467[chr1:229409656-229409997]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 229409796 rs11339660 CT C
EP300 FOXA1 FOXA2 FOXP1 IRF1 IRF9 PRDM1 SPIC STAT1 STAT2
1009990
chr1 229409796 rs566601152 CT C
EP300 FOXA1 FOXA2 FOXP1 IRF1 IRF9 PRDM1 SPIC STAT1 STAT2
1009991
chr1 229409848 rs2941077 G A
FOXA1
1009992
chr1 229409862 rs149013581 C G no 1009993
chr1 229409966 rs397864012 AT A
FOXP1 IRF1
1009994
chr1 229409983 rs529955394 A T
FOXP1 IRF1
1009995
Genes possibly regulated by vista5467[chr1:229409656-229409997]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 229385383 229387557 + TMEM78 ENSG00000177800.2 229385383 0.93 0.96 1928 75727
chr1 229406822 229441641 + RAB4A ENSG00000168118.7 229406822 0.61 1.0 1929 97166
chr1 229440129 229441248 + SPHAR ENSG00000213029.2 229440129 0.0 0.0 1930 69868
chr1 229456758 229479041 - CCSAP ENSG00000154429.6 229479041 0.85 0.99 1931 30956
Expression level of Genes
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miRNAs possibly regulated by vista5467[chr1:229409656-229409997]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results