EnhancerDB
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  3. vista5493[chr1:230258907-230259286]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5493[chr1:230258907-230259286]
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Tissue distribution of vista5493
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Transcription factor that possibly regulate vista5493[chr1:230258907-230259286]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 230258901 230259331 EP300 UCSC Txn Factor no Conserved 107878706
chr1 230258911 230259329 RELA UCSC Txn Factor no Conserved 107878708
chr1 230258949 230259316 EBF1 UCSC Txn Factor no Conserved 107878710
chr1 230259000 230259330 BHLHE40 UCSC Txn Factor no Conserved 107878716
chr1 230258933 230258937 YY1 TRANSFAC yes 36023134
chr1 230258933 230258937 YY1 TRANSFAC yes 118477697
chr1 230258939 230258948 HIC2 JASPAR yes 36023135
chr1 230258939 230258948 HIC2 JASPAR yes 118477698
chr1 230258962 230258980 NR3C1 JASPAR yes 36023136
chr1 230258962 230258980 NR3C1 JASPAR yes 118477699
chr1 230258983 230258994 USF1 JASPAR yes 36023137
chr1 230258983 230258994 USF2 JASPAR yes 36023138
chr1 230258983 230258994 USF1 JASPAR yes 118477700
chr1 230258983 230258994 USF2 JASPAR yes 118477701
chr1 230258986 230258991 USF2 TRANSFAC yes 36023139
chr1 230258986 230258991 USF2 TRANSFAC yes 118477702
chr1 230259012 230259022 NKX2-3 JASPAR yes 36023140
chr1 230259012 230259022 NKX2-3 JASPAR yes 118477703
chr1 230259029 230259037 FOXO3 JASPAR yes 36023141
chr1 230259029 230259037 FOXO3 JASPAR yes 118477704
chr1 230259031 230259042 STAT3 JASPAR yes 36023142
chr1 230259031 230259042 STAT3 JASPAR yes 118477705
chr1 230259064 230259068 YY1 TRANSFAC yes 36023143
chr1 230259064 230259068 YY1 TRANSFAC yes 118477706
chr1 230259075 230259089 EBF1 JASPAR yes 36023144
chr1 230259075 230259089 EBF1 JASPAR yes 118477707
chr1 230259077 230259088 EBF1 JASPAR yes 36023145
chr1 230259077 230259088 EBF1 JASPAR yes 118477708
chr1 230259083 230259088 SP1 TRANSFAC yes 36023146
chr1 230259083 230259088 SP1 TRANSFAC yes 118477709
chr1 230259098 230259108 NFKB1 JASPAR yes 36023147
chr1 230259098 230259108 REL JASPAR yes 36023148
chr1 230259098 230259108 NFKB1 JASPAR yes 118477710
chr1 230259098 230259108 REL JASPAR yes 118477711
chr1 230259098 230259109 NFKB1 JASPAR yes 36023149
chr1 230259098 230259109 NFKB1 JASPAR yes 118477712
chr1 230259098 230259113 HSF1 JASPAR yes 36023150
chr1 230259098 230259113 HSF1 JASPAR yes 118477713
chr1 230259099 230259112 HSF2 JASPAR yes 36023151
chr1 230259099 230259112 HSF2 JASPAR yes 118477714
chr1 230259103 230259118 HSF1 JASPAR yes 36023152
chr1 230259103 230259118 HSF1 JASPAR yes 118477715
chr1 230259113 230259117 YY1 TRANSFAC yes 36023153
chr1 230259113 230259117 YY1 TRANSFAC yes 118477716
chr1 230259116 230259128 PBX1 JASPAR yes 36023154
chr1 230259116 230259128 PBX1 JASPAR yes 118477717
chr1 230259118 230259131 JUN JASPAR yes 36023155
chr1 230259118 230259131 JUN JASPAR yes 118477718
chr1 230259122 230259136 BATF3 JASPAR yes 36023156
chr1 230259122 230259136 BATF3 JASPAR yes 118477719
chr1 230259124 230259132 MEIS2 JASPAR yes 36023157
chr1 230259124 230259132 MEIS3 JASPAR yes 36023158
chr1 230259124 230259132 MEIS2 JASPAR yes 118477720
chr1 230259124 230259132 MEIS3 JASPAR yes 118477721
chr1 230259126 230259142 ZNF143 JASPAR yes 36023159
chr1 230259126 230259142 ZNF143 JASPAR yes 118477722
chr1 230259136 230259147 NFKB1 JASPAR yes 36023160
chr1 230259136 230259147 NFKB1 JASPAR yes 118477723
chr1 230259151 230259165 EBF1 JASPAR yes 36023161
chr1 230259151 230259165 EBF1 JASPAR yes 118477724
chr1 230259152 230259163 EBF1 JASPAR yes 36023162
chr1 230259152 230259163 EBF1 JASPAR yes 118477725
chr1 230259152 230259166 EBF1 JASPAR yes 36023163
chr1 230259152 230259166 EBF1 JASPAR yes 118477726
chr1 230259153 230259159 MZF1 JASPAR yes 36023164
chr1 230259153 230259159 MZF1 JASPAR yes 118477727
chr1 230259154 230259165 EBF1 JASPAR yes 36023165
chr1 230259154 230259165 EBF1 JASPAR yes 118477728
chr1 230259177 230259181 LFA1 TRANSFAC yes 36023166
chr1 230259177 230259181 LFA1 TRANSFAC yes 118477729
chr1 230259177 230259187 MAX JASPAR yes 36023167
chr1 230259177 230259187 MAX JASPAR yes 118477730
chr1 230259192 230259196 ESR1 TRANSFAC yes 36023168
chr1 230259192 230259196 ESR1 TRANSFAC yes 118477731
chr1 230259200 230259206 SOX10 JASPAR yes 36023169
chr1 230259200 230259206 SOX10 JASPAR yes 118477732
chr1 230259227 230259230 MYB TRANSFAC yes 36023170
chr1 230259227 230259230 MYB TRANSFAC yes 118477733
chr1 230259231 230259236 ATF1 TRANSFAC yes 36023171
chr1 230259231 230259236 ATF1 TRANSFAC yes 118477734
chr1 230259265 230259274 THAP1 JASPAR yes 36023172
chr1 230259265 230259274 THAP1 JASPAR yes 118477735
chr1 230259266 230259276 GCM2 JASPAR yes 36023173
chr1 230259266 230259276 GCM2 JASPAR yes 118477736
SNP sites on vista5493[chr1:230258907-230259286]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 230258949 rs185726208 G A
EBF1 EP300 RELA
1014944
chr1 230259005 rs112594944 C T
BHLHE40 EBF1 EP300 RELA
1014945
chr1 230259082 rs534325950 T TG
BHLHE40 EBF1 EP300 RELA
1014946
chr1 230259132 rs116665924 C A
BATF3 BHLHE40 EBF1 EP300 MEIS2 MEIS3 RELA ZNF143
1014947
chr1 230259223 rs538704724 G A,T
BHLHE40 EBF1 EP300 RELA
1014948
chr1 230259227 rs139360579 A G
BHLHE40 EBF1 EP300 MYB RELA
1014949
chr1 230259240 rs577736084 A G
BHLHE40 EBF1 EP300 RELA
1014950
Genes possibly regulated by vista5493[chr1:230258907-230259286]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 230193536 230417870 + GALNT2 ENSG00000143641.8 230193536 0.77 0.99 1937 34629
Expression level of Genes
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miRNAs possibly regulated by vista5493[chr1:230258907-230259286]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results