EnhancerDB
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  3. vista5500[chr1:230561990-230562633]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5500[chr1:230561990-230562633]
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Tissue distribution of vista5500
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Transcription factor that possibly regulate vista5500[chr1:230561990-230562633]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 230562073 230562766 REST UCSC Txn Factor no Conserved 107878846
chr1 230562199 230562639 SIN3AK20 UCSC Txn Factor no Conserved 107878852
chr1 230562232 230562668 MXI1 UCSC Txn Factor no Conserved 107878857
chr1 230562241 230562677 MAX UCSC Txn Factor no Conserved 107878863
chr1 230562314 230562610 SIN3A UCSC Txn Factor no Conserved 107878884
chr1 230562315 230562591 ELF1 UCSC Txn Factor no Conserved 107878887
chr1 230561996 230562008 ZBTB7C JASPAR yes 118478106
chr1 230562035 230562056 ZNF263 JASPAR yes 118478107
chr1 230562040 230562049 THAP1 JASPAR yes 118478108
chr1 230562042 230562049 SP1 TRANSFAC yes 118478109
chr1 230562044 230562049 SP1 TRANSFAC yes 118478110
chr1 230562057 230562068 TFAP2A JASPAR yes 118478111
chr1 230562057 230562068 TFAP2B JASPAR yes 118478112
chr1 230562057 230562068 TFAP2C JASPAR yes 118478113
chr1 230562086 230562097 E2F1 JASPAR yes 118478114
chr1 230562087 230562098 E2F4 JASPAR yes 118478115
chr1 230562103 230562108 SP1 TRANSFAC yes 118478116
chr1 230562104 230562109 SP1 TRANSFAC yes 118478117
chr1 230562111 230562122 E2F1 JASPAR yes 118478118
chr1 230562115 230562120 SP1 TRANSFAC yes 118478119
chr1 230562115 230562121 SP1 TRANSFAC yes 118478120
chr1 230562115 230562130 NR2C2 JASPAR yes 118478121
chr1 230562124 230562135 E2F4 JASPAR yes 118478122
chr1 230562124 230562135 E2F6 JASPAR yes 118478123
chr1 230562125 230562136 E2F1 JASPAR yes 118478124
chr1 230562129 230562134 SP1 TRANSFAC yes 118478125
chr1 230562133 230562148 NFYB JASPAR yes 118478126
chr1 230562135 230562151 NFYA JASPAR yes 118478127
chr1 230562136 230562154 NFYA JASPAR yes 118478128
chr1 230562140 230562144 H1TF2 TRANSFAC yes 118478129
chr1 230562140 230562144 NFE TRANSFAC yes 118478130
chr1 230562140 230562144 SRF TRANSFAC yes 118478131
chr1 230562144 230562149 TFAP2A TRANSFAC yes 118478132
chr1 230562144 230562150 MZF1 JASPAR yes 118478133
chr1 230562162 230562177 ZIC3 JASPAR yes 118478134
chr1 230562163 230562175 TFAP2A JASPAR yes 118478135
chr1 230562164 230562173 TFAP2A JASPAR yes 118478136
chr1 230562177 230562186 SP1 TRANSFAC yes 118478137
chr1 230562178 230562183 SP1 TRANSFAC yes 118478138
chr1 230562179 230562184 SP1 TRANSFAC yes 118478139
chr1 230562192 230562205 NFKB1 JASPAR yes 118478140
chr1 230562193 230562204 NFKB1 JASPAR yes 118478141
chr1 230562194 230562205 NFKB1 JASPAR yes 118478142
chr1 230562195 230562205 NFKB1 JASPAR yes 118478143
chr1 230562195 230562205 REL JASPAR yes 118478144
chr1 230562198 230562203 SP1 TRANSFAC yes 118478145
chr1 230562212 230562226 ZIC1 JASPAR yes 118478146
chr1 230562217 230562227 SP1 JASPAR yes 118478147
chr1 230562217 230562233 TEAD2 TRANSFAC yes 118478148
chr1 230562218 230562226 SP1 TRANSFAC yes 118478149
chr1 230562218 230562227 SP1 TRANSFAC yes 118478150
chr1 230562219 230562224 SP1 TRANSFAC yes 118478151
chr1 230562220 230562225 SP1 TRANSFAC yes 118478152
chr1 230562220 230562226 SP1 TRANSFAC yes 118478153
chr1 230562222 230562232 SP1 JASPAR yes 118478154
chr1 230562223 230562231 SP1 TRANSFAC yes 118478155
chr1 230562223 230562232 SP1 TRANSFAC yes 118478156
chr1 230562224 230562229 SP1 TRANSFAC yes 118478157
chr1 230562225 230562230 SP1 TRANSFAC yes 118478158
chr1 230562225 230562231 SP1 TRANSFAC yes 118478159
chr1 230562239 230562259 RREB1 JASPAR yes 118478160
chr1 230562250 230562262 INSM1 JASPAR yes 118478161
chr1 230562252 230562262 MZF1 JASPAR yes 118478162
chr1 230562255 230562265 SP1 JASPAR yes 118478163
chr1 230562257 230562263 MAZ TRANSFAC yes 118478164
chr1 230562265 230562276 TFAP2A JASPAR yes 118478165
chr1 230562265 230562276 TFAP2B JASPAR yes 118478166
chr1 230562265 230562276 TFAP2C JASPAR yes 118478167
chr1 230562324 230562335 E2F1 JASPAR yes 118478168
chr1 230562325 230562336 E2F4 JASPAR yes 118478169
chr1 230562325 230562336 E2F6 JASPAR yes 118478170
chr1 230562329 230562335 MAZ TRANSFAC yes 118478171
chr1 230562330 230562340 MZF1 JASPAR yes 118478172
chr1 230562333 230562343 SP1 JASPAR yes 118478173
chr1 230562335 230562341 MAZ TRANSFAC yes 118478174
chr1 230562338 230562344 SP1 TRANSFAC yes 118478175
chr1 230562339 230562344 SP1 TRANSFAC yes 118478176
chr1 230562340 230562345 SP1 TRANSFAC yes 118478177
chr1 230562348 230562369 ZNF263 JASPAR yes 118478178
chr1 230562349 230562370 ZNF263 JASPAR yes 118478179
chr1 230562351 230562372 ZNF263 JASPAR yes 118478180
chr1 230562359 230562369 SP1 JASPAR yes 118478181
chr1 230562359 230562379 ESR1 JASPAR yes 118478182
chr1 230562360 230562370 SP1 JASPAR yes 118478183
chr1 230562361 230562367 MAZ TRANSFAC yes 118478184
chr1 230562362 230562372 MZF1 JASPAR yes 118478185
chr1 230562387 230562391 H4TF2 TRANSFAC yes 118478186
chr1 230562390 230562409 REST JASPAR yes 118478187
chr1 230562396 230562408 HINFP JASPAR yes 118478188
chr1 230562427 230562431 NFE TRANSFAC yes 118478189
chr1 230562434 230562440 ETS1 JASPAR yes 118478190
chr1 230562434 230562440 SPI1 JASPAR yes 118478191
chr1 230562449 230562464 TFAP2C JASPAR yes 118478192
chr1 230562452 230562463 EBF1 JASPAR yes 118478193
chr1 230562464 230562468 NFE TRANSFAC yes 118478194
chr1 230562468 230562473 SP1 TRANSFAC yes 118478195
chr1 230562468 230562474 SP1 TRANSFAC yes 118478196
chr1 230562513 230562518 SP1 TRANSFAC yes 118478197
chr1 230562517 230562522 SP1 TRANSFAC yes 118478198
chr1 230562524 230562535 ESRRA JASPAR yes 118478199
chr1 230562526 230562534 NR4A2 JASPAR yes 118478200
chr1 230562527 230562542 ESR2 JASPAR yes 118478201
chr1 230562528 230562532 ESR1 TRANSFAC yes 118478202
chr1 230562533 230562547 ZIC1 JASPAR yes 118478203
chr1 230562560 230562577 RARA JASPAR yes 118478204
chr1 230562562 230562576 GLIS2 JASPAR yes 118478205
chr1 230562570 230562588 ESR1 JASPAR yes 118478206
chr1 230562572 230562576 ESR1 TRANSFAC yes 118478207
chr1 230562578 230562590 NHLH1 JASPAR yes 118478208
chr1 230562579 230562589 NHLH1 JASPAR yes 118478209
chr1 230562598 230562608 HOXA13 JASPAR yes 118478210
chr1 230562598 230562608 HOXB13 JASPAR yes 118478211
chr1 230562598 230562608 HOXD13 JASPAR yes 118478212
chr1 230562610 230562620 NFKB1 JASPAR yes 118478213
chr1 230562614 230562618 NFE TRANSFAC yes 118478214
chr1 230562622 230562633 STAT1 JASPAR yes 118478215
chr1 230562622 230562633 STAT3 JASPAR yes 118478216
chr1 230562623 230562631 STAT6 TRANSFAC yes 118478217
SNP sites on vista5500[chr1:230561990-230562633]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 230562002 rs529701921 C T
ZBTB7C
1017631
chr1 230562051 rs191821173 T C
ZNF263
1017632
chr1 230562286 rs373904174 T C
MAX MXI1 REST SIN3AK20
1017633
chr1 230562300 rs182403984 C G
MAX MXI1 REST SIN3AK20
1017634
chr1 230562318 rs535011789 C T
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017635
chr1 230562367 rs547220075 GGGGACCC G
ELF1 ESR1 MAX MAZ MXI1 MZF1 REST SIN3A SIN3AK20 SP1 ZNF263
1017636
chr1 230562416 rs537515890 C G,T
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017637
chr1 230562419 rs556411801 T A,C,G
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017638
chr1 230562419 rs557862089 T TC
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017639
chr1 230562434 rs372317094 C G,T
ELF1 ETS1 MAX MXI1 REST SIN3A SIN3AK20 SPI1
1017640
chr1 230562503 rs534341503 A C
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017641
chr1 230562539 rs113014513 C A,G
ELF1 ESR2 MAX MXI1 REST SIN3A SIN3AK20 ZIC1
1017642
chr1 230562553 rs539004401 T TGCTGCCGAGGTTTCCTGGGGGTC
ELF1 MAX MXI1 REST SIN3A SIN3AK20
1017643
Genes possibly regulated by vista5500[chr1:230561990-230562633]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 230457392 230561475 - PGBD5 ENSG00000177614.5 230561475 0.76 0.98 1938 99485
Expression level of Genes
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miRNAs possibly regulated by vista5500[chr1:230561990-230562633]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results