EnhancerDB
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  3. vista5509[chr1:230772335-230772728]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5509[chr1:230772335-230772728]
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Tissue distribution of vista5509
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Transcription factor that possibly regulate vista5509[chr1:230772335-230772728]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 230772339 230772347 GATA3 JASPAR yes 118478672
chr1 230772340 230772352 MEF2D JASPAR yes 118478673
chr1 230772350 230772371 IRF1 JASPAR yes 118478674
chr1 230772352 230772367 STAT2 JASPAR yes 118478675
chr1 230772354 230772366 IRF1 JASPAR yes 118478676
chr1 230772354 230772369 IRF9 JASPAR yes 118478677
chr1 230772362 230772372 HOXA13 JASPAR yes 118478678
chr1 230772362 230772372 HOXB13 JASPAR yes 118478679
chr1 230772362 230772372 HOXD13 JASPAR yes 118478680
chr1 230772362 230772373 HOXA10 JASPAR yes 118478681
chr1 230772363 230772372 CDX1 JASPAR yes 118478682
chr1 230772363 230772373 MNX1 JASPAR yes 118478683
chr1 230772363 230772374 CDX2 JASPAR yes 118478684
chr1 230772365 230772376 PHOX2A JASPAR yes 118478685
chr1 230772390 230772394 YY1 TRANSFAC yes 118478686
chr1 230772396 230772406 NFATC3 JASPAR yes 118478687
chr1 230772398 230772408 RELA JASPAR yes 118478688
chr1 230772398 230772408 REL JASPAR yes 118478689
chr1 230772398 230772409 NFKB1 JASPAR yes 118478690
chr1 230772399 230772409 RELA JASPAR yes 118478691
chr1 230772399 230772409 REL JASPAR yes 118478692
chr1 230772400 230772410 TEAD4 JASPAR yes 118478693
chr1 230772417 230772427 NFKB1 JASPAR yes 118478694
chr1 230772417 230772427 REL JASPAR yes 118478695
chr1 230772417 230772428 NFKB1 JASPAR yes 118478696
chr1 230772433 230772443 MEOX2 JASPAR yes 118478697
chr1 230772436 230772440 YY1 TRANSFAC yes 118478698
chr1 230772437 230772450 HNF1B JASPAR yes 118478699
chr1 230772458 230772469 FOXH1 JASPAR yes 118478700
chr1 230772500 230772516 POU4F3 JASPAR yes 118478701
chr1 230772503 230772513 BARHL2 JASPAR yes 118478702
chr1 230772508 230772524 POU4F3 JASPAR yes 118478703
chr1 230772509 230772530 IRF1 JASPAR yes 118478704
chr1 230772510 230772524 POU4F1 JASPAR yes 118478705
chr1 230772511 230772526 IRF9 JASPAR yes 118478706
chr1 230772512 230772518 TBP TRANSFAC yes 118478707
chr1 230772512 230772526 IRF7 JASPAR yes 118478708
chr1 230772513 230772527 STAT1 JASPAR yes 118478709
chr1 230772513 230772528 PRDM1 JASPAR yes 118478710
chr1 230772513 230772528 STAT2 JASPAR yes 118478711
chr1 230772514 230772526 IRF1 JASPAR yes 118478712
chr1 230772516 230772529 POU2F2 JASPAR yes 118478713
chr1 230772580 230772591 CEBPA JASPAR yes 118478714
chr1 230772581 230772591 CEBPB JASPAR yes 118478715
chr1 230772581 230772591 CEBPD JASPAR yes 118478716
chr1 230772581 230772591 CEBPE JASPAR yes 118478717
chr1 230772581 230772591 CEBPG JASPAR yes 118478718
chr1 230772581 230772592 CEBPB JASPAR yes 118478719
chr1 230772602 230772608 MZF1 JASPAR yes 118478720
chr1 230772624 230772628 LFA1 TRANSFAC yes 118478721
chr1 230772638 230772658 RREB1 JASPAR yes 118478722
chr1 230772644 230772654 SP1 JASPAR yes 118478723
chr1 230772644 230772658 PLAG1 JASPAR yes 118478724
chr1 230772653 230772658 TFAP2A TRANSFAC yes 118478725
chr1 230772653 230772659 MZF1 JASPAR yes 118478726
chr1 230772653 230772674 ZNF263 JASPAR yes 118478727
chr1 230772654 230772675 ZNF263 JASPAR yes 118478728
chr1 230772655 230772660 ETS2 TRANSFAC yes 118478729
chr1 230772656 230772677 ZNF263 JASPAR yes 118478730
chr1 230772663 230772673 MZF1 JASPAR yes 118478731
chr1 230772663 230772675 E2F8 JASPAR yes 118478732
chr1 230772704 230772717 POU2F2 JASPAR yes 118478733
chr1 230772705 230772717 POU3F1 JASPAR yes 118478734
chr1 230772705 230772717 POU3F2 JASPAR yes 118478735
chr1 230772706 230772710 YY1 TRANSFAC yes 118478736
chr1 230772712 230772716 YY1 TRANSFAC yes 118478737
SNP sites on vista5509[chr1:230772335-230772728]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 230772372 rs565024355 G A
CDX1 CDX2 HOXA10 HOXA13 HOXB13 HOXD13 MNX1 PHOX2A
1019065
chr1 230772582 rs73116225 G C
CEBPA CEBPB CEBPD CEBPE CEBPG
1019066
chr1 230772609 rs549265955 A G no 1019067
chr1 230772682 rs11122563 G T no 1019068
chr1 230772684 rs75750060 A G no 1019069
Genes possibly regulated by vista5509[chr1:230772335-230772728]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 230778235 230829728 + COG2 ENSG00000135775.9 230778235 0.6 0.99 1939 94493
chr1 230838269 230850043 - AGT ENSG00000135744.7 230850043 1.0 1.0 1940 22685
Expression level of Genes
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miRNAs possibly regulated by vista5509[chr1:230772335-230772728]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results