EnhancerDB
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  3. vista556[chr1:17494378-17494745]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista556[chr1:17494378-17494745]
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Tissue distribution of vista556
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Transcription factor that possibly regulate vista556[chr1:17494378-17494745]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 17494389 17494409 TP63 JASPAR yes 27073914
chr1 17494389 17494409 TP63 JASPAR yes 118240468
chr1 17494390 17494408 TP53 JASPAR yes 27073915
chr1 17494390 17494408 TP63 JASPAR yes 27073916
chr1 17494390 17494408 TP73 JASPAR yes 27073917
chr1 17494390 17494408 TP53 JASPAR yes 118240469
chr1 17494390 17494408 TP63 JASPAR yes 118240470
chr1 17494390 17494408 TP73 JASPAR yes 118240471
chr1 17494391 17494406 TP53 JASPAR yes 27073918
chr1 17494391 17494406 TP53 JASPAR yes 118240472
chr1 17494392 17494407 TP53 JASPAR yes 27073919
chr1 17494392 17494407 TP53 JASPAR yes 118240473
chr1 17494411 17494414 MYB TRANSFAC yes 27073920
chr1 17494411 17494414 MYB TRANSFAC yes 118240474
chr1 17494421 17494436 ESR2 JASPAR yes 27073921
chr1 17494421 17494436 ESR2 JASPAR yes 118240475
chr1 17494425 17494440 JUND JASPAR yes 27073922
chr1 17494425 17494440 JUND JASPAR yes 118240476
chr1 17494427 17494441 ATF7 JASPAR yes 27073923
chr1 17494427 17494441 BATF3 JASPAR yes 27073924
chr1 17494427 17494441 ATF7 JASPAR yes 118240477
chr1 17494427 17494441 BATF3 JASPAR yes 118240478
chr1 17494428 17494440 JDP2 JASPAR yes 27073925
chr1 17494428 17494440 JDP2 JASPAR yes 118240479
chr1 17494428 17494443 JUND JASPAR yes 27073926
chr1 17494428 17494443 JUND JASPAR yes 118240480
chr1 17494429 17494438 JUN TRANSFAC yes 27073927
chr1 17494429 17494438 JUN TRANSFAC yes 118240481
chr1 17494429 17494442 JUN JASPAR yes 27073928
chr1 17494429 17494442 JUN JASPAR yes 118240482
chr1 17494430 17494437 JUN TRANSFAC yes 27073929
chr1 17494430 17494437 JUN TRANSFAC yes 118240483
chr1 17494461 17494479 MAFF JASPAR yes 27073930
chr1 17494461 17494479 MAFF JASPAR yes 118240484
chr1 17494462 17494477 MAFK JASPAR yes 27073931
chr1 17494462 17494477 MAFK JASPAR yes 118240485
chr1 17494465 17494469 ESR1 TRANSFAC yes 27073932
chr1 17494465 17494469 ESR1 TRANSFAC yes 118240486
chr1 17494466 17494477 NRL JASPAR yes 27073933
chr1 17494466 17494477 NRL JASPAR yes 118240487
chr1 17494471 17494475 YY1 TRANSFAC yes 27073934
chr1 17494471 17494475 YY1 TRANSFAC yes 118240488
chr1 17494482 17494494 GLI2 JASPAR yes 27073935
chr1 17494482 17494494 GLI2 JASPAR yes 118240489
chr1 17494482 17494496 GLIS3 JASPAR yes 27073936
chr1 17494482 17494496 GLIS3 JASPAR yes 118240490
chr1 17494496 17494504 ISL2 JASPAR yes 27073937
chr1 17494496 17494504 ISL2 JASPAR yes 118240491
chr1 17494496 17494505 NKX3-2 JASPAR yes 27073938
chr1 17494496 17494505 NKX3-2 JASPAR yes 118240492
chr1 17494503 17494514 TBX20 JASPAR yes 27073939
chr1 17494503 17494514 TBX20 JASPAR yes 118240493
chr1 17494505 17494517 PKNOX2 JASPAR yes 27073940
chr1 17494505 17494517 PKNOX2 JASPAR yes 118240494
chr1 17494519 17494522 MYB TRANSFAC yes 27073941
chr1 17494519 17494522 MYB TRANSFAC yes 118240495
chr1 17494532 17494547 NFYB JASPAR yes 27073942
chr1 17494532 17494547 NFYB JASPAR yes 118240496
chr1 17494537 17494543 NFIC JASPAR yes 27073943
chr1 17494537 17494543 NFIC JASPAR yes 118240497
chr1 17494539 17494543 H1TF2 TRANSFAC yes 27073944
chr1 17494539 17494543 NFE TRANSFAC yes 27073945
chr1 17494539 17494543 SRF TRANSFAC yes 27073946
chr1 17494539 17494543 H1TF2 TRANSFAC yes 118240498
chr1 17494539 17494543 NFE TRANSFAC yes 118240499
chr1 17494539 17494543 SRF TRANSFAC yes 118240500
chr1 17494556 17494561 MYB TRANSFAC yes 27073947
chr1 17494556 17494561 MYB TRANSFAC yes 118240501
chr1 17494558 17494564 JUN TRANSFAC yes 27073948
chr1 17494558 17494564 JUN TRANSFAC yes 118240502
chr1 17494562 17494581 REST JASPAR yes 27073949
chr1 17494562 17494581 REST JASPAR yes 118240503
chr1 17494564 17494583 REST JASPAR yes 27073950
chr1 17494564 17494583 REST JASPAR yes 118240504
chr1 17494592 17494596 ESR1 TRANSFAC yes 27073951
chr1 17494592 17494596 ESR1 TRANSFAC yes 118240505
chr1 17494616 17494633 RXRA JASPAR yes 27073952
chr1 17494616 17494633 RXRA JASPAR yes 118240506
chr1 17494665 17494674 HIC2 JASPAR yes 27073953
chr1 17494665 17494674 HIC2 JASPAR yes 118240507
chr1 17494668 17494672 LFA1 TRANSFAC yes 27073954
chr1 17494668 17494672 LFA1 TRANSFAC yes 118240508
chr1 17494669 17494679 NEUROG2 JASPAR yes 27073955
chr1 17494669 17494679 NEUROG2 JASPAR yes 118240509
chr1 17494671 17494675 YY1 TRANSFAC yes 27073956
chr1 17494671 17494675 YY1 TRANSFAC yes 118240510
chr1 17494676 17494687 E2F6 JASPAR yes 27073957
chr1 17494676 17494687 E2F6 JASPAR yes 118240511
chr1 17494689 17494702 NFKB2 JASPAR yes 27073958
chr1 17494689 17494702 NFKB2 JASPAR yes 118240512
chr1 17494690 17494701 NFKB1 JASPAR yes 27073959
chr1 17494690 17494701 NFKB1 JASPAR yes 118240513
chr1 17494691 17494701 NFKB1 JASPAR yes 27073960
chr1 17494691 17494701 NFKB1 JASPAR yes 118240514
chr1 17494720 17494734 JUN JASPAR yes 27073961
chr1 17494720 17494734 JUN JASPAR yes 118240515
chr1 17494722 17494733 BATF JASPAR yes 27073962
chr1 17494722 17494733 BATF JASPAR yes 118240516
chr1 17494723 17494734 JUNB JASPAR yes 27073963
chr1 17494723 17494734 JUNB JASPAR yes 118240517
chr1 17494724 17494735 FOS JASPAR yes 27073964
chr1 17494724 17494735 FOSL1 JASPAR yes 27073965
chr1 17494724 17494735 JUND JASPAR yes 27073966
chr1 17494724 17494735 FOS JASPAR yes 118240518
chr1 17494724 17494735 FOSL1 JASPAR yes 118240519
chr1 17494724 17494735 JUND JASPAR yes 118240520
chr1 17494725 17494736 JUNB JASPAR yes 27073967
chr1 17494725 17494736 JUNB JASPAR yes 118240521
chr1 17494725 17494739 JUN JASPAR yes 27073968
chr1 17494725 17494739 JUN JASPAR yes 118240522
chr1 17494726 17494733 JUN TRANSFAC yes 27073969
chr1 17494726 17494733 JUN TRANSFAC yes 118240523
chr1 17494726 17494735 SMAD4 TRANSFAC yes 27073970
chr1 17494726 17494735 SMAD4 TRANSFAC yes 118240524
chr1 17494726 17494737 BATF JASPAR yes 27073971
chr1 17494726 17494737 BATF JASPAR yes 118240525
chr1 17494740 17494750 GSX1 JASPAR yes 27073972
chr1 17494740 17494750 GSX1 JASPAR yes 118240526
chr1 17494743 17494747 YY1 TRANSFAC yes 27073973
chr1 17494743 17494747 YY1 TRANSFAC yes 118240527
SNP sites on vista556[chr1:17494378-17494745]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 17494492 rs55824167 C T
GLI2 GLIS3
116277
chr1 17494507 rs74397096 T C
PKNOX2 TBX20
116278
chr1 17494572 rs77066748 C T
REST
116279
chr1 17494586 rs12059662 C T no 116280
chr1 17494589 rs192102993 G A,T no 116281
chr1 17494661 rs117348971 C T no 116282
chr1 17494737 rs72913635 C A
BATF JUN
116283
Genes possibly regulated by vista556[chr1:17494378-17494745]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 17393256 17445948 - PADI2 ENSG00000117115.8 17445948 0.86 1.0 241 51570
chr1 17531621 17572500 + PADI1 ENSG00000142623.8 17531621 1.0 0.97 242 63124
chr1 17575593 17610728 + PADI3 ENSG00000142619.4 17575593 0.97 0.99 243 19152
Expression level of Genes
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miRNAs possibly regulated by vista556[chr1:17494378-17494745]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results