EnhancerDB
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  3. vista558[chr1:17518130-17518260]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista558[chr1:17518130-17518260]
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Tissue distribution of vista558
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Transcription factor that possibly regulate vista558[chr1:17518130-17518260]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 17518117 17518130 SMAD2 JASPAR yes 27076519
chr1 17518117 17518130 SMAD2 JASPAR yes 118240559
chr1 17518129 17518133 NFE TRANSFAC yes 27076520
chr1 17518129 17518133 NFE TRANSFAC yes 118240560
chr1 17518137 17518152 FOXP1 JASPAR yes 27076521
chr1 17518137 17518152 FOXP1 JASPAR yes 118240561
chr1 17518138 17518153 FOXP1 JASPAR yes 27076522
chr1 17518138 17518153 FOXP1 JASPAR yes 118240562
chr1 17518173 17518185 MEF2A JASPAR yes 27076523
chr1 17518173 17518185 MEF2A JASPAR yes 118240563
chr1 17518174 17518184 MEF2A JASPAR yes 27076524
chr1 17518174 17518184 MEF2A JASPAR yes 118240564
chr1 17518187 17518191 NFE TRANSFAC yes 27076525
chr1 17518187 17518191 NFE TRANSFAC yes 118240565
chr1 17518221 17518232 HOXC12 JASPAR yes 27076526
chr1 17518221 17518232 HOXC12 JASPAR yes 118240566
chr1 17518257 17518263 PEA3 TRANSFAC yes 27076527
chr1 17518257 17518263 PEA3 TRANSFAC yes 118240567
SNP sites on vista558[chr1:17518130-17518260]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 17518160 rs12744275 A G no 116564
Genes possibly regulated by vista558[chr1:17518130-17518260]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 17393256 17445948 - PADI2 ENSG00000117115.8 17445948 0.86 1.0 241 27818
chr1 17531621 17572500 + PADI1 ENSG00000142623.8 17531621 1.0 0.97 242 86639
chr1 17575593 17610728 + PADI3 ENSG00000142619.4 17575593 0.97 0.99 243 42667
Expression level of Genes
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miRNAs possibly regulated by vista558[chr1:17518130-17518260]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results