EnhancerDB
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  3. vista5590[chr1:234450953-234451201]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5590[chr1:234450953-234451201]
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Tissue distribution of vista5590
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Transcription factor that possibly regulate vista5590[chr1:234450953-234451201]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 234450965 234451365 FOS UCSC Txn Factor no Conserved 107879912
chr1 234450969 234450975 ZNF354C JASPAR yes 36270951
chr1 234450969 234450975 ZNF354C JASPAR yes 118482241
chr1 234450969 234450980 DMRT3 JASPAR yes 36270952
chr1 234450969 234450980 DMRT3 JASPAR yes 118482242
chr1 234450971 234450976 GATA2 JASPAR yes 36270953
chr1 234450971 234450976 GATA2 JASPAR yes 118482243
chr1 234450993 234451009 SRF JASPAR yes 36270954
chr1 234450993 234451009 SRF JASPAR yes 118482244
chr1 234450999 234451003 TEAD2 TRANSFAC yes 36270955
chr1 234450999 234451003 TEAD2 TRANSFAC yes 118482245
chr1 234451006 234451010 TEAD2 TRANSFAC yes 36270956
chr1 234451006 234451010 TEAD2 TRANSFAC yes 118482246
chr1 234451008 234451011 MYB TRANSFAC yes 36270957
chr1 234451008 234451011 MYB TRANSFAC yes 118482247
chr1 234451021 234451029 GMEB2 JASPAR yes 36270958
chr1 234451021 234451029 GMEB2 JASPAR yes 118482248
chr1 234451026 234451029 MYB TRANSFAC yes 36270959
chr1 234451026 234451029 MYB TRANSFAC yes 118482249
chr1 234451057 234451061 YY1 TRANSFAC yes 36270960
chr1 234451057 234451061 YY1 TRANSFAC yes 118482250
chr1 234451070 234451073 MYB TRANSFAC yes 36270961
chr1 234451070 234451073 MYB TRANSFAC yes 118482251
chr1 234451072 234451084 FOXI1 JASPAR yes 36270962
chr1 234451072 234451084 FOXI1 JASPAR yes 118482252
chr1 234451075 234451087 TAL1 JASPAR yes 36270963
chr1 234451075 234451087 TAL1 JASPAR yes 118482253
chr1 234451083 234451089 TCF4 TRANSFAC yes 36270964
chr1 234451083 234451089 TCF4 TRANSFAC yes 118482254
chr1 234451088 234451099 HOXC12 JASPAR yes 36270965
chr1 234451088 234451099 HOXC12 JASPAR yes 118482255
chr1 234451089 234451099 HMBOX1 JASPAR yes 36270966
chr1 234451089 234451099 HMBOX1 JASPAR yes 118482256
chr1 234451091 234451094 MYB TRANSFAC yes 36270967
chr1 234451091 234451094 MYB TRANSFAC yes 118482257
chr1 234451092 234451108 RFX5 JASPAR yes 36270968
chr1 234451092 234451108 RFX5 JASPAR yes 118482258
chr1 234451103 234451114 RUNX1 JASPAR yes 36270969
chr1 234451103 234451114 RUNX1 JASPAR yes 118482259
chr1 234451120 234451123 MYB TRANSFAC yes 36270970
chr1 234451120 234451123 MYB TRANSFAC yes 118482260
chr1 234451130 234451136 NFIC JASPAR yes 36270971
chr1 234451130 234451136 NFIC JASPAR yes 118482261
chr1 234451137 234451147 ERF JASPAR yes 36270972
chr1 234451137 234451147 ERF JASPAR yes 118482262
chr1 234451138 234451145 SPI1 JASPAR yes 36270973
chr1 234451138 234451145 SPI1 JASPAR yes 118482263
chr1 234451146 234451157 FOS JASPAR yes 36270974
chr1 234451146 234451157 FOSL1 JASPAR yes 36270975
chr1 234451146 234451157 FOS JASPAR yes 118482264
chr1 234451146 234451157 FOSL1 JASPAR yes 118482265
chr1 234451147 234451158 FOSL2 JASPAR yes 36270976
chr1 234451147 234451158 FOSL2 JASPAR yes 118482266
chr1 234451148 234451154 JUN TRANSFAC yes 36270977
chr1 234451148 234451154 JUN TRANSFAC yes 118482267
chr1 234451155 234451167 TEAD1 JASPAR yes 36270978
chr1 234451155 234451167 TEAD1 JASPAR yes 118482268
chr1 234451156 234451164 TEAD3 JASPAR yes 36270979
chr1 234451156 234451164 TEAD3 JASPAR yes 118482269
chr1 234451159 234451174 FOXA1 JASPAR yes 36270980
chr1 234451159 234451174 FOXA1 JASPAR yes 118482270
chr1 234451160 234451172 FOXI1 JASPAR yes 36270981
chr1 234451160 234451172 FOXI1 JASPAR yes 118482271
chr1 234451160 234451175 FOXP1 JASPAR yes 36270982
chr1 234451160 234451175 FOXP1 JASPAR yes 118482272
chr1 234451161 234451172 FOXP2 JASPAR yes 36270983
chr1 234451161 234451172 FOXP2 JASPAR yes 118482273
chr1 234451161 234451173 FOXC2 JASPAR yes 36270984
chr1 234451161 234451173 FOXC2 JASPAR yes 118482274
chr1 234451162 234451173 FOXB1 JASPAR yes 36270985
chr1 234451162 234451173 FOXC1 JASPAR yes 36270986
chr1 234451162 234451173 FOXB1 JASPAR yes 118482275
chr1 234451162 234451173 FOXC1 JASPAR yes 118482276
chr1 234451163 234451174 FOXA1 JASPAR yes 36270987
chr1 234451163 234451174 FOXA1 JASPAR yes 118482277
chr1 234451189 234451197 BARX1 JASPAR yes 36270988
chr1 234451189 234451197 EN1 JASPAR yes 36270989
chr1 234451189 234451197 ISL2 JASPAR yes 36270990
chr1 234451189 234451197 MSX1 JASPAR yes 36270991
chr1 234451189 234451197 MSX2 JASPAR yes 36270992
chr1 234451189 234451197 PDX1 JASPAR yes 36270993
chr1 234451189 234451197 BARX1 JASPAR yes 118482278
chr1 234451189 234451197 EN1 JASPAR yes 118482279
chr1 234451189 234451197 ISL2 JASPAR yes 118482280
chr1 234451189 234451197 MSX1 JASPAR yes 118482281
chr1 234451189 234451197 MSX2 JASPAR yes 118482282
chr1 234451189 234451197 PDX1 JASPAR yes 118482283
SNP sites on vista5590[chr1:234450953-234451201]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 234450963 rs4027082 G A no 1041069
chr1 234450998 rs184651705 C G,T
FOS SRF
1041070
chr1 234451004 rs533823546 A C
FOS SRF
1041071
chr1 234451011 rs77922920 A C
FOS MYB
1041072
chr1 234451056 rs6663458 C T
FOS
1041073
chr1 234451059 rs6668287 A G
FOS YY1
1041074
chr1 234451146 rs611676 A G
ERF FOS FOSL1
1041075
chr1 234451159 rs508186 A T
FOS FOXA1 TEAD1 TEAD3
1041076
Genes possibly regulated by vista5590[chr1:234450953-234451201]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 234509202 234519795 + COA6 ENSG00000168275.10 234509202 0.88 0.98 1962 41999
Expression level of Genes
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miRNAs possibly regulated by vista5590[chr1:234450953-234451201]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results