EnhancerDB
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  3. vista560[chr1:17525310-17525501]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista560[chr1:17525310-17525501]
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Tissue distribution of vista560
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Transcription factor that possibly regulate vista560[chr1:17525310-17525501]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 17525317 17525327 SP1 JASPAR yes 118240604
chr1 17525318 17525322 LFA1 TRANSFAC yes 118240605
chr1 17525323 17525328 ETS2 TRANSFAC yes 118240606
chr1 17525343 17525361 MAFF JASPAR yes 118240607
chr1 17525345 17525360 MAFK JASPAR yes 118240608
chr1 17525358 17525372 ZIC1 JASPAR yes 118240609
chr1 17525358 17525373 SCRT1 JASPAR yes 118240610
chr1 17525358 17525373 ZIC3 JASPAR yes 118240611
chr1 17525358 17525373 ZIC4 JASPAR yes 118240612
chr1 17525360 17525369 SNAI2 JASPAR yes 118240613
chr1 17525360 17525373 SCRT2 JASPAR yes 118240614
chr1 17525361 17525366 USF2 TRANSFAC yes 118240615
chr1 17525367 17525372 TFAP2A TRANSFAC yes 118240616
chr1 17525367 17525373 MZF1 JASPAR yes 118240617
chr1 17525371 17525382 NFE2 JASPAR yes 118240618
chr1 17525377 17525392 RFX5 JASPAR yes 118240619
chr1 17525383 17525387 ESR1 TRANSFAC yes 118240620
chr1 17525389 17525404 TFAP2A JASPAR yes 118240621
chr1 17525389 17525404 TFAP2C JASPAR yes 118240622
chr1 17525391 17525404 TFAP2A JASPAR yes 118240623
chr1 17525391 17525404 TFAP2B JASPAR yes 118240624
chr1 17525391 17525404 TFAP2C JASPAR yes 118240625
chr1 17525392 17525404 TFAP2A JASPAR yes 118240626
chr1 17525392 17525404 TFAP2B JASPAR yes 118240627
chr1 17525392 17525404 TFAP2C JASPAR yes 118240628
chr1 17525396 17525411 HNF4G JASPAR yes 118240629
chr1 17525397 17525412 HNF4A JASPAR yes 118240630
chr1 17525399 17525403 LFA1 TRANSFAC yes 118240631
chr1 17525406 17525417 USF1 JASPAR yes 118240632
chr1 17525406 17525418 HES5 JASPAR yes 118240633
chr1 17525418 17525430 NHLH1 JASPAR yes 118240634
chr1 17525419 17525429 NHLH1 JASPAR yes 118240635
chr1 17525424 17525438 TLX1 JASPAR yes 118240636
chr1 17525433 17525453 TP63 JASPAR yes 118240637
chr1 17525438 17525445 E2F1 TRANSFAC yes 118240638
chr1 17525442 17525447 SP1 TRANSFAC yes 118240639
chr1 17525444 17525453 SP1 TRANSFAC yes 118240640
chr1 17525447 17525453 NFE2 TRANSFAC yes 118240641
chr1 17525465 17525469 YY1 TRANSFAC yes 118240642
chr1 17525468 17525471 MYB TRANSFAC yes 118240643
chr1 17525468 17525486 MAFF JASPAR yes 118240644
chr1 17525483 17525493 MAX JASPAR yes 118240645
SNP sites on vista560[chr1:17525310-17525501]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 17525352 rs573836484 C T
MAFF MAFK
116721
chr1 17525379 rs72913683 C T
NFE2 RFX5
116722
chr1 17525380 rs183495051 G A
NFE2 RFX5
116723
chr1 17525441 rs12136357 T G
E2F1 TP63
116724
chr1 17525483 rs145050047 C G
MAFF MAX
116725
Genes possibly regulated by vista560[chr1:17525310-17525501]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 17393256 17445948 - PADI2 ENSG00000117115.8 17445948 0.86 1.0 241 20638
chr1 17531621 17572500 + PADI1 ENSG00000142623.8 17531621 1.0 0.97 242 93880
chr1 17575593 17610728 + PADI3 ENSG00000142619.4 17575593 0.97 0.99 243 49908
Expression level of Genes
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miRNAs possibly regulated by vista560[chr1:17525310-17525501]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results