EnhancerDB
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  3. vista562[chr1:17557386-17557571]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista562[chr1:17557386-17557571]
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Tissue distribution of vista562
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Transcription factor that possibly regulate vista562[chr1:17557386-17557571]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 17557403 17557413 SP1 JASPAR yes 27079997
chr1 17557403 17557413 SP1 JASPAR yes 118240697
chr1 17557405 17557411 MAZ TRANSFAC yes 27079998
chr1 17557405 17557411 MAZ TRANSFAC yes 118240698
chr1 17557410 17557414 LFA1 TRANSFAC yes 27079999
chr1 17557410 17557414 LFA1 TRANSFAC yes 118240699
chr1 17557415 17557419 ESR1 TRANSFAC yes 27080000
chr1 17557415 17557419 ESR1 TRANSFAC yes 118240700
chr1 17557419 17557438 CTCF JASPAR yes 27080001
chr1 17557419 17557438 CTCF JASPAR yes 118240701
chr1 17557433 17557438 GATA2 JASPAR yes 27080002
chr1 17557433 17557438 GATA2 JASPAR yes 118240702
chr1 17557438 17557443 SP1 TRANSFAC yes 27080003
chr1 17557438 17557443 SP1 TRANSFAC yes 118240703
chr1 17557446 17557450 ESR1 TRANSFAC yes 27080004
chr1 17557446 17557450 ESR1 TRANSFAC yes 118240704
chr1 17557452 17557462 MZF1 JASPAR yes 27080005
chr1 17557452 17557462 MZF1 JASPAR yes 118240705
chr1 17557462 17557468 NFIC JASPAR yes 27080006
chr1 17557462 17557468 NFIC JASPAR yes 118240706
chr1 17557463 17557478 RUNX2 JASPAR yes 27080007
chr1 17557463 17557478 RUNX2 JASPAR yes 118240707
chr1 17557466 17557478 GLI2 JASPAR yes 27080008
chr1 17557466 17557478 GLI2 JASPAR yes 118240708
chr1 17557472 17557476 ESR1 TRANSFAC yes 27080009
chr1 17557472 17557476 ESR1 TRANSFAC yes 118240709
chr1 17557477 17557488 EBF1 JASPAR yes 27080010
chr1 17557477 17557488 EBF1 JASPAR yes 118240710
chr1 17557481 17557486 TFAP2A TRANSFAC yes 27080011
chr1 17557481 17557486 TFAP2A TRANSFAC yes 118240711
chr1 17557481 17557487 MZF1 JASPAR yes 27080012
chr1 17557481 17557487 MZF1 JASPAR yes 118240712
chr1 17557563 17557577 E2F7 JASPAR yes 27080013
chr1 17557563 17557577 E2F7 JASPAR yes 118240713
chr1 17557565 17557576 TBX2 JASPAR yes 27080014
chr1 17557565 17557576 TBX2 JASPAR yes 118240714
chr1 17557566 17557576 TBR1 JASPAR yes 27080015
chr1 17557566 17557576 TBR1 JASPAR yes 118240715
chr1 17557567 17557576 NFIX JASPAR yes 27080016
chr1 17557567 17557576 NFIX JASPAR yes 118240716
chr1 17557567 17557577 NFIA JASPAR yes 27080017
chr1 17557567 17557577 NFIA JASPAR yes 118240717
chr1 17557569 17557575 NFIC JASPAR yes 27080018
chr1 17557569 17557575 NFIC JASPAR yes 118240718
SNP sites on vista562[chr1:17557386-17557571]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 17557426 rs2977236 C G,T
CTCF
117159
chr1 17557443 rs113081455 G A
SP1
117160
Genes possibly regulated by vista562[chr1:17557386-17557571]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 17531621 17572500 + PADI1 ENSG00000142623.8 17531621 1.0 0.97 242 74235
chr1 17575593 17610728 + PADI3 ENSG00000142619.4 17575593 0.97 0.99 243 81978
chr1 17634690 17690499 + PADI4 ENSG00000159339.9 17634690 0.97 1.0 244 22881
Expression level of Genes
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miRNAs possibly regulated by vista562[chr1:17557386-17557571]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results