EnhancerDB
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  3. vista5699[chr1:235460869-235461278]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5699[chr1:235460869-235461278]
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Tissue distribution of vista5699
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Transcription factor that possibly regulate vista5699[chr1:235460869-235461278]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 235460916 235461204 RUNX3 UCSC Txn Factor no Conserved 107885981
chr1 235460876 235460882 SOX10 JASPAR yes 36362342
chr1 235460876 235460882 SOX10 JASPAR yes 118488005
chr1 235460888 235460902 GATA2 JASPAR yes 36362343
chr1 235460888 235460902 GATA2 JASPAR yes 118488006
chr1 235460889 235460898 GATA1 TRANSFAC yes 36362344
chr1 235460889 235460898 GATA1 TRANSFAC yes 118488007
chr1 235460890 235460896 GATA1 TRANSFAC yes 36362345
chr1 235460890 235460896 GATA1 TRANSFAC yes 118488008
chr1 235460890 235460898 GATA5 JASPAR yes 36362346
chr1 235460890 235460898 GATA5 JASPAR yes 118488009
chr1 235460902 235460906 TEAD2 TRANSFAC yes 36362347
chr1 235460902 235460906 TEAD2 TRANSFAC yes 118488010
chr1 235460902 235460907 TBP TRANSFAC yes 36362348
chr1 235460902 235460907 TBP TRANSFAC yes 118488011
chr1 235460908 235460913 GATA2 JASPAR yes 36362349
chr1 235460908 235460913 GATA2 JASPAR yes 118488012
chr1 235460932 235460947 RUNX2 JASPAR yes 36362350
chr1 235460932 235460947 RUNX2 JASPAR yes 118488013
chr1 235460938 235460954 NFYA JASPAR yes 36362351
chr1 235460938 235460954 NFYA JASPAR yes 118488014
chr1 235460939 235460957 NFYA JASPAR yes 36362352
chr1 235460939 235460957 NFYA JASPAR yes 118488015
chr1 235460943 235460947 H1TF2 TRANSFAC yes 36362353
chr1 235460943 235460947 NFE TRANSFAC yes 36362354
chr1 235460943 235460947 SRF TRANSFAC yes 36362355
chr1 235460943 235460947 H1TF2 TRANSFAC yes 118488016
chr1 235460943 235460947 NFE TRANSFAC yes 118488017
chr1 235460943 235460947 SRF TRANSFAC yes 118488018
chr1 235460949 235460970 IRF1 JASPAR yes 36362356
chr1 235460949 235460970 IRF1 JASPAR yes 118488019
chr1 235460951 235460966 IRF9 JASPAR yes 36362357
chr1 235460951 235460966 IRF9 JASPAR yes 118488020
chr1 235460952 235460966 IRF8 JASPAR yes 36362358
chr1 235460952 235460966 IRF8 JASPAR yes 118488021
chr1 235460953 235460968 STAT2 JASPAR yes 36362359
chr1 235460953 235460968 STAT2 JASPAR yes 118488022
chr1 235460953 235460971 IRF2 JASPAR yes 36362360
chr1 235460953 235460971 IRF2 JASPAR yes 118488023
chr1 235460954 235460966 IRF1 JASPAR yes 36362361
chr1 235460954 235460966 IRF1 JASPAR yes 118488024
chr1 235460958 235460972 IRF7 JASPAR yes 36362362
chr1 235460958 235460972 IRF8 JASPAR yes 36362363
chr1 235460958 235460972 IRF7 JASPAR yes 118488025
chr1 235460958 235460972 IRF8 JASPAR yes 118488026
chr1 235460982 235460992 HMBOX1 JASPAR yes 36362364
chr1 235460982 235460992 HMBOX1 JASPAR yes 118488027
chr1 235460983 235461000 BCL6B JASPAR yes 36362365
chr1 235460983 235461000 BCL6B JASPAR yes 118488028
chr1 235460984 235460987 MYB TRANSFAC yes 36362366
chr1 235460984 235460987 MYB TRANSFAC yes 118488029
chr1 235461008 235461023 FOXP1 JASPAR yes 36362367
chr1 235461008 235461023 FOXP1 JASPAR yes 118488030
chr1 235461011 235461022 FOXP2 JASPAR yes 36362368
chr1 235461011 235461022 FOXP2 JASPAR yes 118488031
chr1 235461012 235461016 TEAD2 TRANSFAC yes 36362369
chr1 235461012 235461016 TEAD2 TRANSFAC yes 118488032
chr1 235461012 235461017 TBP TRANSFAC yes 36362370
chr1 235461012 235461017 TBP TRANSFAC yes 118488033
chr1 235461013 235461021 FOXG1 JASPAR yes 36362371
chr1 235461013 235461021 FOXO3 JASPAR yes 36362372
chr1 235461013 235461021 FOXG1 JASPAR yes 118488034
chr1 235461013 235461021 FOXO3 JASPAR yes 118488035
chr1 235461013 235461022 SRY JASPAR yes 36362373
chr1 235461013 235461022 SRY JASPAR yes 118488036
chr1 235461015 235461024 SOX9 JASPAR yes 36362374
chr1 235461015 235461024 SOX9 JASPAR yes 118488037
chr1 235461038 235461052 GLIS3 JASPAR yes 36362375
chr1 235461038 235461052 GLIS3 JASPAR yes 118488038
chr1 235461059 235461074 STAT1 JASPAR yes 36362376
chr1 235461059 235461074 STAT1 JASPAR yes 118488039
chr1 235461061 235461072 STAT1 JASPAR yes 36362377
chr1 235461061 235461072 STAT1 JASPAR yes 118488040
chr1 235461063 235461074 ETV2 JASPAR yes 36362378
chr1 235461063 235461074 ETV2 JASPAR yes 118488041
chr1 235461064 235461074 ERF JASPAR yes 36362379
chr1 235461064 235461074 ERG JASPAR yes 36362380
chr1 235461064 235461074 ETS1 JASPAR yes 36362381
chr1 235461064 235461074 FLI1 JASPAR yes 36362382
chr1 235461064 235461074 ERF JASPAR yes 118488042
chr1 235461064 235461074 ERG JASPAR yes 118488043
chr1 235461064 235461074 ETS1 JASPAR yes 118488044
chr1 235461064 235461074 FLI1 JASPAR yes 118488045
chr1 235461064 235461075 FLI1 JASPAR yes 36362383
chr1 235461064 235461075 FLI1 JASPAR yes 118488046
chr1 235461065 235461073 FEV JASPAR yes 36362384
chr1 235461065 235461073 FEV JASPAR yes 118488047
chr1 235461087 235461102 RUNX2 JASPAR yes 36362385
chr1 235461087 235461102 RUNX2 JASPAR yes 118488048
chr1 235461088 235461097 RUNX2 JASPAR yes 36362386
chr1 235461088 235461097 RUNX2 JASPAR yes 118488049
chr1 235461088 235461098 RUNX3 JASPAR yes 36362387
chr1 235461088 235461098 RUNX3 JASPAR yes 118488050
chr1 235461088 235461099 RUNX1 JASPAR yes 36362388
chr1 235461088 235461099 RUNX1 JASPAR yes 118488051
chr1 235461093 235461099 SOX10 JASPAR yes 36362389
chr1 235461093 235461099 SOX10 JASPAR yes 118488052
chr1 235461096 235461109 DUXA JASPAR yes 36362390
chr1 235461096 235461109 DUXA JASPAR yes 118488053
chr1 235461097 235461108 DUX4 JASPAR yes 36362391
chr1 235461097 235461108 DUX4 JASPAR yes 118488054
chr1 235461105 235461123 NFYA JASPAR yes 36362392
chr1 235461105 235461123 NFYA JASPAR yes 118488055
chr1 235461122 235461133 NFKB1 JASPAR yes 36362393
chr1 235461122 235461133 NFKB1 JASPAR yes 118488056
chr1 235461127 235461142 SCRT1 JASPAR yes 36362394
chr1 235461127 235461142 SCRT1 JASPAR yes 118488057
chr1 235461142 235461145 MYB TRANSFAC yes 36362395
chr1 235461142 235461145 MYB TRANSFAC yes 118488058
chr1 235461164 235461185 ZNF263 JASPAR yes 36362396
chr1 235461164 235461185 ZNF263 JASPAR yes 118488059
chr1 235461165 235461169 LFA1 TRANSFAC yes 36362397
chr1 235461165 235461169 LFA1 TRANSFAC yes 118488060
chr1 235461190 235461208 NR3C1 JASPAR yes 36362398
chr1 235461190 235461208 NR3C1 JASPAR yes 118488061
chr1 235461193 235461203 BARHL2 JASPAR yes 36362399
chr1 235461193 235461203 BARHL2 JASPAR yes 118488062
chr1 235461195 235461199 YY1 TRANSFAC yes 36362400
chr1 235461195 235461199 YY1 TRANSFAC yes 118488063
chr1 235461206 235461211 GATA1 TRANSFAC yes 36362401
chr1 235461206 235461211 GATA1 TRANSFAC yes 118488064
chr1 235461231 235461243 SRF JASPAR yes 36362402
chr1 235461231 235461243 SRF JASPAR yes 118488065
chr1 235461234 235461238 YY1 TRANSFAC yes 36362403
chr1 235461234 235461238 YY1 TRANSFAC yes 118488066
chr1 235461240 235461244 H4TF2 TRANSFAC yes 36362404
chr1 235461240 235461244 H4TF2 TRANSFAC yes 118488067
chr1 235461263 235461269 TCF4 TRANSFAC yes 36362405
chr1 235461263 235461269 TCF4 TRANSFAC yes 118488068
chr1 235461271 235461275 YY1 TRANSFAC yes 36362406
chr1 235461271 235461275 YY1 TRANSFAC yes 118488069
SNP sites on vista5699[chr1:235460869-235461278]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 235460910 rs192622520 G A
GATA2
1050542
chr1 235460984 rs13374466 G A
BCL6B HMBOX1 MYB RUNX3
1050543
chr1 235461080 rs74420399 G T
RUNX3
1050544
chr1 235461120 rs536846257 T C
NFYA RUNX3
1050545
chr1 235461161 rs79212165 A C
RUNX3
1050546
chr1 235461179 rs186800077 G T
RUNX3 ZNF263
1050547
Genes possibly regulated by vista5699[chr1:235460869-235461278]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 235294949 235491534 - ARID4B ENSG00000054267.16 235491534 0.68 0.99 1967 69744
chr1 235490665 235507847 + GGPS1 ENSG00000152904.7 235490665 0.68 0.99 1968 70613
chr1 235530675 235612283 + TBCE ENSG00000116957.8 235530675 0.67 0.99 1969 30603
Expression level of Genes
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miRNAs possibly regulated by vista5699[chr1:235460869-235461278]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 235353355 235353376 - hsa-miR-4753-3p MIMAT0019891 235491482 0.011307326482423758 0.883879 0.0 133
Expression level of miRNAs
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