EnhancerDB
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  3. vista5700[chr1:235468267-235468477]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5700[chr1:235468267-235468477]
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Tissue distribution of vista5700
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Transcription factor that possibly regulate vista5700[chr1:235468267-235468477]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 235467858 235468342 GATA3 UCSC Txn Factor no Conserved 107885984
chr1 235468270 235468280 MZF1 JASPAR yes 36363283
chr1 235468270 235468280 MZF1 JASPAR yes 118488070
chr1 235468272 235468282 SP1 JASPAR yes 36363284
chr1 235468272 235468282 SP1 JASPAR yes 118488071
chr1 235468273 235468279 SP1 TRANSFAC yes 36363285
chr1 235468273 235468279 SP1 TRANSFAC yes 118488072
chr1 235468273 235468283 SP1 JASPAR yes 36363286
chr1 235468273 235468283 SP1 JASPAR yes 118488073
chr1 235468273 235468293 RREB1 JASPAR yes 36363287
chr1 235468273 235468293 RREB1 JASPAR yes 118488074
chr1 235468274 235468284 ZNF740 JASPAR yes 36363288
chr1 235468274 235468284 ZNF740 JASPAR yes 118488075
chr1 235468277 235468283 MZF1 JASPAR yes 36363289
chr1 235468277 235468283 MZF1 JASPAR yes 118488076
chr1 235468280 235468300 RREB1 JASPAR yes 36363290
chr1 235468280 235468300 RREB1 JASPAR yes 118488077
chr1 235468317 235468331 GATA2 JASPAR yes 36363291
chr1 235468317 235468331 GATA2 JASPAR yes 118488078
chr1 235468321 235468329 GATA5 JASPAR yes 36363292
chr1 235468321 235468329 GATA5 JASPAR yes 118488079
chr1 235468327 235468331 NFE TRANSFAC yes 36363293
chr1 235468327 235468331 NFE TRANSFAC yes 118488080
chr1 235468340 235468358 MAFF JASPAR yes 36363294
chr1 235468340 235468358 MAFF JASPAR yes 118488081
chr1 235468342 235468357 MAFK JASPAR yes 36363295
chr1 235468342 235468357 MAFK JASPAR yes 118488082
chr1 235468367 235468377 ALX3 JASPAR yes 36363296
chr1 235468367 235468377 EMX1 JASPAR yes 36363297
chr1 235468367 235468377 EMX2 JASPAR yes 36363298
chr1 235468367 235468377 EN2 JASPAR yes 36363299
chr1 235468367 235468377 ESX1 JASPAR yes 36363300
chr1 235468367 235468377 EVX1 JASPAR yes 36363301
chr1 235468367 235468377 EVX2 JASPAR yes 36363302
chr1 235468367 235468377 GBX1 JASPAR yes 36363303
chr1 235468367 235468377 GBX2 JASPAR yes 36363304
chr1 235468367 235468377 GSX1 JASPAR yes 36363305
chr1 235468367 235468377 GSX2 JASPAR yes 36363306
chr1 235468367 235468377 HESX1 JASPAR yes 36363307
chr1 235468367 235468377 HOXA2 JASPAR yes 36363308
chr1 235468367 235468377 HOXB2 JASPAR yes 36363309
chr1 235468367 235468377 HOXB3 JASPAR yes 36363310
chr1 235468367 235468377 LBX2 JASPAR yes 36363311
chr1 235468367 235468377 LHX2 JASPAR yes 36363312
chr1 235468367 235468377 LHX6 JASPAR yes 36363313
chr1 235468367 235468377 MEOX1 JASPAR yes 36363314
chr1 235468367 235468377 MEOX2 JASPAR yes 36363315
chr1 235468367 235468377 MIXL1 JASPAR yes 36363316
chr1 235468367 235468377 NOTO JASPAR yes 36363317
chr1 235468367 235468377 POU6F1 JASPAR yes 36363318
chr1 235468367 235468377 RAX JASPAR yes 36363319
chr1 235468367 235468377 ALX3 JASPAR yes 118488083
chr1 235468367 235468377 EMX1 JASPAR yes 118488084
chr1 235468367 235468377 EMX2 JASPAR yes 118488085
chr1 235468367 235468377 EN2 JASPAR yes 118488086
chr1 235468367 235468377 ESX1 JASPAR yes 118488087
chr1 235468367 235468377 EVX1 JASPAR yes 118488088
chr1 235468367 235468377 EVX2 JASPAR yes 118488089
chr1 235468367 235468377 GBX1 JASPAR yes 118488090
chr1 235468367 235468377 GBX2 JASPAR yes 118488091
chr1 235468367 235468377 GSX1 JASPAR yes 118488092
chr1 235468367 235468377 GSX2 JASPAR yes 118488093
chr1 235468367 235468377 HESX1 JASPAR yes 118488094
chr1 235468367 235468377 HOXA2 JASPAR yes 118488095
chr1 235468367 235468377 HOXB2 JASPAR yes 118488096
chr1 235468367 235468377 HOXB3 JASPAR yes 118488097
chr1 235468367 235468377 LBX2 JASPAR yes 118488098
chr1 235468367 235468377 LHX2 JASPAR yes 118488099
chr1 235468367 235468377 LHX6 JASPAR yes 118488100
chr1 235468367 235468377 MEOX1 JASPAR yes 118488101
chr1 235468367 235468377 MEOX2 JASPAR yes 118488102
chr1 235468367 235468377 MIXL1 JASPAR yes 118488103
chr1 235468367 235468377 NOTO JASPAR yes 118488104
chr1 235468367 235468377 POU6F1 JASPAR yes 118488105
chr1 235468367 235468377 RAX JASPAR yes 118488106
chr1 235468368 235468376 EN1 JASPAR yes 36363320
chr1 235468368 235468376 ISX JASPAR yes 36363321
chr1 235468368 235468376 LBX1 JASPAR yes 36363322
chr1 235468368 235468376 LHX9 JASPAR yes 36363323
chr1 235468368 235468376 PAX4 JASPAR yes 36363324
chr1 235468368 235468376 PDX1 JASPAR yes 36363325
chr1 235468368 235468376 PRRX1 JASPAR yes 36363326
chr1 235468368 235468376 RAX2 JASPAR yes 36363327
chr1 235468368 235468376 SHOX JASPAR yes 36363328
chr1 235468368 235468376 UNCX JASPAR yes 36363329
chr1 235468368 235468376 VAX1 JASPAR yes 36363330
chr1 235468368 235468376 VAX2 JASPAR yes 36363331
chr1 235468368 235468376 VSX1 JASPAR yes 36363332
chr1 235468368 235468376 VSX2 JASPAR yes 36363333
chr1 235468368 235468376 EN1 JASPAR yes 118488107
chr1 235468368 235468376 ISX JASPAR yes 118488108
chr1 235468368 235468376 LBX1 JASPAR yes 118488109
chr1 235468368 235468376 LHX9 JASPAR yes 118488110
chr1 235468368 235468376 PAX4 JASPAR yes 118488111
chr1 235468368 235468376 PDX1 JASPAR yes 118488112
chr1 235468368 235468376 PRRX1 JASPAR yes 118488113
chr1 235468368 235468376 RAX2 JASPAR yes 118488114
chr1 235468368 235468376 SHOX JASPAR yes 118488115
chr1 235468368 235468376 UNCX JASPAR yes 118488116
chr1 235468368 235468376 VAX1 JASPAR yes 118488117
chr1 235468368 235468376 VAX2 JASPAR yes 118488118
chr1 235468368 235468376 VSX1 JASPAR yes 118488119
chr1 235468368 235468376 VSX2 JASPAR yes 118488120
chr1 235468375 235468386 ESRRA JASPAR yes 36363334
chr1 235468375 235468386 ESRRB JASPAR yes 36363335
chr1 235468375 235468386 ESRRA JASPAR yes 118488121
chr1 235468375 235468386 ESRRB JASPAR yes 118488122
chr1 235468376 235468384 NR4A2 JASPAR yes 36363336
chr1 235468376 235468384 NR4A2 JASPAR yes 118488123
chr1 235468377 235468387 RORA JASPAR yes 36363337
chr1 235468377 235468387 RORA JASPAR yes 118488124
chr1 235468391 235468401 GSC JASPAR yes 36363338
chr1 235468391 235468401 GSC JASPAR yes 118488125
chr1 235468422 235468426 YY1 TRANSFAC yes 36363339
chr1 235468422 235468426 YY1 TRANSFAC yes 118488126
chr1 235468425 235468440 FOXP1 JASPAR yes 36363340
chr1 235468425 235468440 FOXP1 JASPAR yes 118488127
chr1 235468426 235468441 FOXA1 JASPAR yes 36363341
chr1 235468426 235468441 FOXA1 JASPAR yes 118488128
chr1 235468427 235468438 FOXB1 JASPAR yes 36363342
chr1 235468427 235468438 FOXC1 JASPAR yes 36363343
chr1 235468427 235468438 FOXB1 JASPAR yes 118488129
chr1 235468427 235468438 FOXC1 JASPAR yes 118488130
chr1 235468427 235468439 FOXC2 JASPAR yes 36363344
chr1 235468427 235468439 FOXC2 JASPAR yes 118488131
chr1 235468428 235468439 FOXP2 JASPAR yes 36363345
chr1 235468428 235468439 FOXP2 JASPAR yes 118488132
chr1 235468428 235468440 FOXI1 JASPAR yes 36363346
chr1 235468428 235468440 FOXI1 JASPAR yes 118488133
chr1 235468429 235468433 TEAD2 TRANSFAC yes 36363347
chr1 235468429 235468433 TEAD2 TRANSFAC yes 118488134
chr1 235468429 235468434 TBP TRANSFAC yes 36363348
chr1 235468429 235468434 TBP TRANSFAC yes 118488135
chr1 235468430 235468438 FOXG1 JASPAR yes 36363349
chr1 235468430 235468438 FOXG1 JASPAR yes 118488136
chr1 235468432 235468438 HiNF-A TRANSFAC yes 36363350
chr1 235468432 235468438 HiNF-A TRANSFAC yes 118488137
chr1 235468440 235468445 GATA2 JASPAR yes 36363351
chr1 235468440 235468445 GATA2 JASPAR yes 118488138
chr1 235468442 235468449 NKX3-1 JASPAR yes 36363352
chr1 235468442 235468449 NKX3-1 JASPAR yes 118488139
chr1 235468443 235468464 IRF1 JASPAR yes 36363353
chr1 235468443 235468464 IRF1 JASPAR yes 118488140
chr1 235468447 235468451 TEAD2 TRANSFAC yes 36363354
chr1 235468447 235468451 TEAD2 TRANSFAC yes 118488141
chr1 235468447 235468462 PRDM1 JASPAR yes 36363355
chr1 235468447 235468462 PRDM1 JASPAR yes 118488142
chr1 235468454 235468475 ZNF263 JASPAR yes 36363356
chr1 235468454 235468475 ZNF263 JASPAR yes 118488143
chr1 235468456 235468467 E2F6 JASPAR yes 36363357
chr1 235468456 235468467 E2F6 JASPAR yes 118488144
chr1 235468458 235468479 ZNF263 JASPAR yes 36363358
chr1 235468458 235468479 ZNF263 JASPAR yes 118488145
chr1 235468472 235468478 GATA3 JASPAR yes 36363359
chr1 235468472 235468478 GATA3 JASPAR yes 118488146
SNP sites on vista5700[chr1:235468267-235468477]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 235468306 rs7553599 C G
GATA3
1050632
chr1 235468334 rs34163134 A C
GATA3
1050633
chr1 235468390 rs191659565 G A no 1050634
chr1 235468410 rs185254758 T C no 1050635
chr1 235468476 rs190152107 T G
GATA3 ZNF263
1050636
Genes possibly regulated by vista5700[chr1:235468267-235468477]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 235294949 235491534 - ARID4B ENSG00000054267.16 235491534 0.68 0.99 1967 76943
chr1 235490665 235507847 + GGPS1 ENSG00000152904.7 235490665 0.68 0.99 1968 77812
chr1 235530675 235612283 + TBCE ENSG00000116957.8 235530675 0.67 0.99 1969 37802
Expression level of Genes
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miRNAs possibly regulated by vista5700[chr1:235468267-235468477]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 235353355 235353376 - hsa-miR-4753-3p MIMAT0019891 235491482 0.014931927975406236 0.883879 0.0 133
Expression level of miRNAs
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