EnhancerDB
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  3. vista5702[chr1:235484403-235484795]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5702[chr1:235484403-235484795]
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Tissue distribution of vista5702
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Transcription factor that possibly regulate vista5702[chr1:235484403-235484795]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 235484406 235484411 ETS2 TRANSFAC yes 36365509
chr1 235484406 235484411 ETS2 TRANSFAC yes 118488190
chr1 235484409 235484424 FOXA1 JASPAR yes 36365510
chr1 235484409 235484424 FOXA1 JASPAR yes 118488191
chr1 235484410 235484422 FOXC2 JASPAR yes 36365511
chr1 235484410 235484422 FOXC2 JASPAR yes 118488192
chr1 235484411 235484426 AR JASPAR yes 36365512
chr1 235484411 235484426 AR JASPAR yes 118488193
chr1 235484411 235484428 NR3C1 JASPAR yes 36365513
chr1 235484411 235484428 NR3C2 JASPAR yes 36365514
chr1 235484411 235484428 NR3C1 JASPAR yes 118488194
chr1 235484411 235484428 NR3C2 JASPAR yes 118488195
chr1 235484440 235484461 MAFG JASPAR yes 36365515
chr1 235484440 235484461 MAFG JASPAR yes 118488196
chr1 235484446 235484457 NFE2L2 JASPAR yes 36365516
chr1 235484446 235484457 NFE2L2 JASPAR yes 118488197
chr1 235484449 235484459 NFIA JASPAR yes 36365517
chr1 235484449 235484459 NFIA JASPAR yes 118488198
chr1 235484451 235484457 NFIC JASPAR yes 36365518
chr1 235484451 235484457 NFIC JASPAR yes 118488199
chr1 235484459 235484471 TEAD1 JASPAR yes 36365519
chr1 235484459 235484471 TEAD1 JASPAR yes 118488200
chr1 235484459 235484475 SOX8 JASPAR yes 36365520
chr1 235484459 235484475 SOX8 JASPAR yes 118488201
chr1 235484480 235484488 FOXC1 JASPAR yes 36365521
chr1 235484480 235484488 FOXC1 JASPAR yes 118488202
chr1 235484491 235484495 YY1 TRANSFAC yes 36365522
chr1 235484491 235484495 YY1 TRANSFAC yes 118488203
chr1 235484497 235484507 HOXD13 JASPAR yes 36365523
chr1 235484497 235484507 HOXD13 JASPAR yes 118488204
chr1 235484497 235484508 HOXA10 JASPAR yes 36365524
chr1 235484497 235484508 HOXA10 JASPAR yes 118488205
chr1 235484498 235484508 ALX3 JASPAR yes 36365525
chr1 235484498 235484508 GSX1 JASPAR yes 36365526
chr1 235484498 235484508 GSX2 JASPAR yes 36365527
chr1 235484498 235484508 HOXB2 JASPAR yes 36365528
chr1 235484498 235484508 HOXB3 JASPAR yes 36365529
chr1 235484498 235484508 MEOX2 JASPAR yes 36365530
chr1 235484498 235484508 MIXL1 JASPAR yes 36365531
chr1 235484498 235484508 MNX1 JASPAR yes 36365532
chr1 235484498 235484508 ALX3 JASPAR yes 118488206
chr1 235484498 235484508 GSX1 JASPAR yes 118488207
chr1 235484498 235484508 GSX2 JASPAR yes 118488208
chr1 235484498 235484508 HOXB2 JASPAR yes 118488209
chr1 235484498 235484508 HOXB3 JASPAR yes 118488210
chr1 235484498 235484508 MEOX2 JASPAR yes 118488211
chr1 235484498 235484508 MIXL1 JASPAR yes 118488212
chr1 235484498 235484508 MNX1 JASPAR yes 118488213
chr1 235484499 235484507 LMX1A JASPAR yes 36365533
chr1 235484499 235484507 LMX1B JASPAR yes 36365534
chr1 235484499 235484507 NKX6-1 JASPAR yes 36365535
chr1 235484499 235484507 NKX6-2 JASPAR yes 36365536
chr1 235484499 235484507 PDX1 JASPAR yes 36365537
chr1 235484499 235484507 VAX1 JASPAR yes 36365538
chr1 235484499 235484507 VAX2 JASPAR yes 36365539
chr1 235484499 235484507 VSX1 JASPAR yes 36365540
chr1 235484499 235484507 LMX1A JASPAR yes 118488214
chr1 235484499 235484507 LMX1B JASPAR yes 118488215
chr1 235484499 235484507 NKX6-1 JASPAR yes 118488216
chr1 235484499 235484507 NKX6-2 JASPAR yes 118488217
chr1 235484499 235484507 PDX1 JASPAR yes 118488218
chr1 235484499 235484507 VAX1 JASPAR yes 118488219
chr1 235484499 235484507 VAX2 JASPAR yes 118488220
chr1 235484499 235484507 VSX1 JASPAR yes 118488221
chr1 235484499 235484513 POU1F1 JASPAR yes 36365541
chr1 235484499 235484513 POU1F1 JASPAR yes 118488222
chr1 235484500 235484512 POU3F1 JASPAR yes 36365542
chr1 235484500 235484512 POU3F2 JASPAR yes 36365543
chr1 235484500 235484512 POU3F1 JASPAR yes 118488223
chr1 235484500 235484512 POU3F2 JASPAR yes 118488224
chr1 235484500 235484513 POU3F3 JASPAR yes 36365544
chr1 235484500 235484513 POU3F3 JASPAR yes 118488225
chr1 235484503 235484517 FOXF2 JASPAR yes 36365545
chr1 235484503 235484517 FOXF2 JASPAR yes 118488226
chr1 235484503 235484518 FOXP1 JASPAR yes 36365546
chr1 235484503 235484518 FOXP1 JASPAR yes 118488227
chr1 235484504 235484515 FOXH1 JASPAR yes 36365547
chr1 235484504 235484515 FOXH1 JASPAR yes 118488228
chr1 235484505 235484514 CDX1 JASPAR yes 36365548
chr1 235484505 235484514 CDX1 JASPAR yes 118488229
chr1 235484505 235484515 HOXA13 JASPAR yes 36365549
chr1 235484505 235484515 HOXA13 JASPAR yes 118488230
chr1 235484505 235484517 FOXC2 JASPAR yes 36365550
chr1 235484505 235484517 FOXC2 JASPAR yes 118488231
chr1 235484506 235484517 FOXP2 JASPAR yes 36365551
chr1 235484506 235484517 FOXP2 JASPAR yes 118488232
chr1 235484508 235484516 FOXG1 JASPAR yes 36365552
chr1 235484508 235484516 FOXO3 JASPAR yes 36365553
chr1 235484508 235484516 FOXG1 JASPAR yes 118488233
chr1 235484508 235484516 FOXO3 JASPAR yes 118488234
chr1 235484512 235484518 SOX10 JASPAR yes 36365554
chr1 235484512 235484518 SOX10 JASPAR yes 118488235
chr1 235484517 235484528 CEBPA JASPAR yes 36365555
chr1 235484517 235484528 CEBPA JASPAR yes 118488236
chr1 235484519 235484540 REST JASPAR yes 36365556
chr1 235484519 235484540 REST JASPAR yes 118488237
chr1 235484520 235484539 REST JASPAR yes 36365557
chr1 235484520 235484539 REST JASPAR yes 118488238
chr1 235484536 235484548 GRHL1 JASPAR yes 36365558
chr1 235484536 235484548 GRHL1 JASPAR yes 118488239
chr1 235484544 235484556 HNF1B JASPAR yes 36365559
chr1 235484544 235484556 HNF1B JASPAR yes 118488240
chr1 235484548 235484552 YY1 TRANSFAC yes 36365560
chr1 235484548 235484552 YY1 TRANSFAC yes 118488241
chr1 235484549 235484560 HOXC13 JASPAR yes 36365561
chr1 235484549 235484560 HOXC13 JASPAR yes 118488242
chr1 235484581 235484589 HOXA5 JASPAR yes 36365562
chr1 235484581 235484589 HOXA5 JASPAR yes 118488243
chr1 235484642 235484653 RUNX1 JASPAR yes 36365563
chr1 235484642 235484653 RUNX1 JASPAR yes 118488244
chr1 235484651 235484654 MYB TRANSFAC yes 36365564
chr1 235484651 235484654 MYB TRANSFAC yes 118488245
chr1 235484655 235484665 TBR1 JASPAR yes 36365565
chr1 235484655 235484665 TBR1 JASPAR yes 118488246
chr1 235484657 235484665 MGA JASPAR yes 36365566
chr1 235484657 235484665 MGA JASPAR yes 118488247
chr1 235484668 235484671 MYB TRANSFAC yes 36365567
chr1 235484668 235484671 MYB TRANSFAC yes 118488248
chr1 235484670 235484680 SP1 JASPAR yes 36365568
chr1 235484670 235484680 SP1 JASPAR yes 118488249
chr1 235484677 235484691 BATF3 JASPAR yes 36365569
chr1 235484677 235484691 BATF3 JASPAR yes 118488250
chr1 235484695 235484709 SPIC JASPAR yes 36365570
chr1 235484695 235484709 SPIC JASPAR yes 118488251
chr1 235484699 235484714 LEF1 JASPAR yes 36365571
chr1 235484699 235484714 LEF1 JASPAR yes 118488252
chr1 235484710 235484720 HMBOX1 JASPAR yes 36365572
chr1 235484710 235484720 HMBOX1 JASPAR yes 118488253
chr1 235484711 235484719 LBX1 JASPAR yes 36365573
chr1 235484711 235484719 LBX1 JASPAR yes 118488254
chr1 235484712 235484715 MYB TRANSFAC yes 36365574
chr1 235484712 235484715 MYB TRANSFAC yes 118488255
chr1 235484721 235484725 H4TF2 TRANSFAC yes 36365575
chr1 235484721 235484725 H4TF2 TRANSFAC yes 118488256
chr1 235484724 235484728 H1TF2 TRANSFAC yes 36365576
chr1 235484724 235484728 NFE TRANSFAC yes 36365577
chr1 235484724 235484728 SRF TRANSFAC yes 36365578
chr1 235484724 235484728 H1TF2 TRANSFAC yes 118488257
chr1 235484724 235484728 NFE TRANSFAC yes 118488258
chr1 235484724 235484728 SRF TRANSFAC yes 118488259
chr1 235484727 235484735 MEIS2 JASPAR yes 36365579
chr1 235484727 235484735 MEIS3 JASPAR yes 36365580
chr1 235484727 235484735 MEIS2 JASPAR yes 118488260
chr1 235484727 235484735 MEIS3 JASPAR yes 118488261
chr1 235484751 235484754 MYB TRANSFAC yes 36365581
chr1 235484751 235484754 MYB TRANSFAC yes 118488262
chr1 235484757 235484761 NFE TRANSFAC yes 36365582
chr1 235484757 235484761 NFE TRANSFAC yes 118488263
chr1 235484757 235484762 GATA1 TRANSFAC yes 36365583
chr1 235484757 235484762 GATA1 TRANSFAC yes 118488264
chr1 235484757 235484763 GATA3 JASPAR yes 36365584
chr1 235484757 235484763 GATA3 JASPAR yes 118488265
chr1 235484764 235484772 FEV JASPAR yes 36365585
chr1 235484764 235484772 FEV JASPAR yes 118488266
chr1 235484780 235484792 YY1 JASPAR yes 36365586
chr1 235484780 235484792 YY1 JASPAR yes 118488267
chr1 235484781 235484802 ZNF263 JASPAR yes 36365587
chr1 235484781 235484802 ZNF263 JASPAR yes 118488268
SNP sites on vista5702[chr1:235484403-235484795]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 235484444 rs138705648 T C
MAFG
1050840
chr1 235484609 rs6697580 T A no 1050841
chr1 235484646 rs116515890 T C
RUNX1
1050842
chr1 235484774 rs560379157 GA G no 1050843
chr1 235484788 rs113051218 T C,G
YY1 ZNF263
1050844
Genes possibly regulated by vista5702[chr1:235484403-235484795]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 235294949 235491534 - ARID4B ENSG00000054267.16 235491534 0.68 0.99 1967 93261
chr1 235490665 235507847 + GGPS1 ENSG00000152904.7 235490665 0.68 0.99 1968 94130
chr1 235530675 235612283 + TBCE ENSG00000116957.8 235530675 0.67 0.99 1969 54120
Expression level of Genes
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miRNAs possibly regulated by vista5702[chr1:235484403-235484795]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 235353355 235353376 - hsa-miR-4753-3p MIMAT0019891 235491482 0.051963930918538896 0.883879 0.0 133
Expression level of miRNAs
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