EnhancerDB
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  3. vista5887[chr1:244462616-244463099]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5887[chr1:244462616-244463099]
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Tissue distribution of vista5887
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Transcription factor that possibly regulate vista5887[chr1:244462616-244463099]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 244462646 244463108 RCOR1 UCSC Txn Factor no Conserved 107888253
chr1 244462655 244462931 TAL1 UCSC Txn Factor no Conserved 107888256
chr1 244462739 244462860 TEAD4 UCSC Txn Factor no Conserved 107888275
chr1 244462740 244463147 CTCF UCSC Txn Factor no Conserved 107888277
chr1 244462776 244463048 RAD21 UCSC Txn Factor no Conserved 107888289
chr1 244462780 244463058 SMC3 UCSC Txn Factor no Conserved 107888292
chr1 244462608 244462629 IRF1 JASPAR yes 36725136
chr1 244462608 244462629 IRF1 JASPAR yes 118497778
chr1 244462610 244462625 PRDM1 JASPAR yes 36725138
chr1 244462610 244462625 PRDM1 JASPAR yes 118497779
chr1 244462615 244462630 SOX21 JASPAR yes 36725139
chr1 244462615 244462630 SOX21 JASPAR yes 118497780
chr1 244462616 244462631 PRDM1 JASPAR yes 36725140
chr1 244462616 244462631 PRDM1 JASPAR yes 118497781
chr1 244462622 244462631 SOX9 JASPAR yes 36725141
chr1 244462622 244462631 SOX9 JASPAR yes 118497782
chr1 244462624 244462633 SRY JASPAR yes 36725142
chr1 244462624 244462633 SRY JASPAR yes 118497783
chr1 244462631 244462652 IRF1 JASPAR yes 36725143
chr1 244462631 244462652 IRF1 JASPAR yes 118497784
chr1 244462633 244462648 STAT2 JASPAR yes 36725144
chr1 244462633 244462648 STAT2 JASPAR yes 118497785
chr1 244462634 244462648 STAT1 JASPAR yes 36725145
chr1 244462634 244462648 STAT1 JASPAR yes 118497786
chr1 244462635 244462647 IRF1 JASPAR yes 36725146
chr1 244462635 244462647 IRF1 JASPAR yes 118497787
chr1 244462645 244462659 E2F7 JASPAR yes 36725147
chr1 244462645 244462659 E2F7 JASPAR yes 118497788
chr1 244462654 244462658 YY1 TRANSFAC yes 36725148
chr1 244462654 244462658 YY1 TRANSFAC yes 118497789
chr1 244462781 244462789 GATA3 JASPAR yes 36725149
chr1 244462781 244462789 GATA3 JASPAR yes 118497790
chr1 244462793 244462807 SPIC JASPAR yes 36725150
chr1 244462793 244462807 SPIC JASPAR yes 118497791
chr1 244462794 244462807 ELF1 JASPAR yes 36725151
chr1 244462794 244462807 ELF1 JASPAR yes 118497792
chr1 244462796 244462807 ETV2 JASPAR yes 36725152
chr1 244462796 244462807 ETV2 JASPAR yes 118497793
chr1 244462797 244462807 GABPA JASPAR yes 36725153
chr1 244462797 244462807 GABPA JASPAR yes 118497794
chr1 244462797 244462808 FLI1 JASPAR yes 36725154
chr1 244462797 244462808 FLI1 JASPAR yes 118497795
chr1 244462817 244462826 THAP1 JASPAR yes 36725155
chr1 244462817 244462826 THAP1 JASPAR yes 118497796
chr1 244462820 244462824 LFA1 TRANSFAC yes 36725156
chr1 244462820 244462824 LFA1 TRANSFAC yes 118497797
chr1 244462849 244462855 NFIC JASPAR yes 36725157
chr1 244462849 244462855 NFIC JASPAR yes 118497798
chr1 244462855 244462872 BCL6B JASPAR yes 36725158
chr1 244462855 244462872 BCL6B JASPAR yes 118497799
chr1 244462874 244462879 SP1 TRANSFAC yes 36725159
chr1 244462874 244462879 SP1 TRANSFAC yes 118497800
chr1 244462883 244462895 PROX1 JASPAR yes 36725160
chr1 244462883 244462895 PROX1 JASPAR yes 118497801
chr1 244462929 244462948 CTCF JASPAR yes 36725161
chr1 244462929 244462948 CTCF JASPAR yes 118497802
chr1 244462931 244462950 CTCF JASPAR yes 36725162
chr1 244462931 244462950 CTCF JASPAR yes 118497803
chr1 244462935 244462940 USF2 TRANSFAC yes 36725163
chr1 244462935 244462940 USF2 TRANSFAC yes 118497804
chr1 244462942 244462947 SP1 TRANSFAC yes 36725164
chr1 244462942 244462947 SP1 TRANSFAC yes 118497805
chr1 244462968 244462985 RXRA JASPAR yes 36725165
chr1 244462968 244462985 RXRA JASPAR yes 118497806
chr1 244462973 244462991 MAFF JASPAR yes 36725166
chr1 244462973 244462991 MAFF JASPAR yes 118497807
chr1 244462994 244463009 IRF9 JASPAR yes 36725167
chr1 244462994 244463009 IRF9 JASPAR yes 118497808
chr1 244462998 244463019 IRF1 JASPAR yes 36725168
chr1 244462998 244463019 IRF1 JASPAR yes 118497809
chr1 244463000 244463015 IRF9 JASPAR yes 36725169
chr1 244463000 244463015 IRF9 JASPAR yes 118497810
chr1 244463001 244463015 IRF8 JASPAR yes 36725170
chr1 244463001 244463015 IRF8 JASPAR yes 118497811
chr1 244463004 244463025 IRF1 JASPAR yes 36725171
chr1 244463004 244463025 IRF1 JASPAR yes 118497812
chr1 244463006 244463021 IRF9 JASPAR yes 36725172
chr1 244463006 244463021 IRF9 JASPAR yes 118497813
chr1 244463007 244463021 IRF7 JASPAR yes 36725173
chr1 244463007 244463021 IRF8 JASPAR yes 36725174
chr1 244463007 244463021 IRF7 JASPAR yes 118497814
chr1 244463007 244463021 IRF8 JASPAR yes 118497815
chr1 244463008 244463023 STAT2 JASPAR yes 36725175
chr1 244463008 244463023 STAT2 JASPAR yes 118497816
chr1 244463019 244463025 YY1 JASPAR yes 36725176
chr1 244463019 244463025 YY1 JASPAR yes 118497817
chr1 244463040 244463053 ELF1 JASPAR yes 36725177
chr1 244463040 244463053 ELF1 JASPAR yes 118497818
chr1 244463043 244463053 GABPA JASPAR yes 36725178
chr1 244463043 244463053 GABPA JASPAR yes 118497819
chr1 244463055 244463067 FOXI1 JASPAR yes 36725179
chr1 244463055 244463067 FOXI1 JASPAR yes 118497820
chr1 244463055 244463070 FOXP1 JASPAR yes 36725180
chr1 244463055 244463070 FOXP1 JASPAR yes 118497821
chr1 244463056 244463067 FOXP2 JASPAR yes 36725181
chr1 244463056 244463067 FOXP2 JASPAR yes 118497822
chr1 244463056 244463070 FOXF2 JASPAR yes 36725182
chr1 244463056 244463070 FOXF2 JASPAR yes 118497823
chr1 244463058 244463069 FOXH1 JASPAR yes 36725183
chr1 244463058 244463069 FOXH1 JASPAR yes 118497824
chr1 244463059 244463071 SRF JASPAR yes 36725184
chr1 244463059 244463071 SRF JASPAR yes 118497825
chr1 244463062 244463066 YY1 TRANSFAC yes 36725185
chr1 244463062 244463066 YY1 TRANSFAC yes 118497826
chr1 244463080 244463085 ETS2 TRANSFAC yes 36725186
chr1 244463080 244463085 ETS2 TRANSFAC yes 118497827
chr1 244463089 244463104 STAT1 JASPAR yes 36725187
chr1 244463089 244463104 STAT1 JASPAR yes 118497828
chr1 244463091 244463102 STAT1 JASPAR yes 36725188
chr1 244463091 244463102 STAT3 JASPAR yes 36725189
chr1 244463091 244463102 STAT1 JASPAR yes 118497829
chr1 244463091 244463102 STAT3 JASPAR yes 118497830
chr1 244463096 244463101 ETS2 TRANSFAC yes 36725190
chr1 244463096 244463101 ETS2 TRANSFAC yes 118497831
SNP sites on vista5887[chr1:244462616-244463099]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 244462634 rs544048255 G A,T
IRF1 STAT1 STAT2
1088751
chr1 244462716 rs7521688 C T
RCOR1 TAL1
1088752
chr1 244462773 rs7533313 A G
CTCF RCOR1 TAL1 TEAD4
1088753
chr1 244462810 rs142904965 T C
CTCF RAD21 RCOR1 SMC3 TAL1 TEAD4
1088754
chr1 244462834 rs79770927 G C
CTCF RAD21 RCOR1 SMC3 TAL1 TEAD4
1088755
chr1 244462877 rs193063123 G C
CTCF RAD21 RCOR1 SMC3 SP1 TAL1
1088756
chr1 244462879 rs78025799 G T
CTCF RAD21 RCOR1 SMC3 SP1 TAL1
1088757
chr1 244462883 rs12736173 G C
CTCF PROX1 RAD21 RCOR1 SMC3 TAL1
1088758
chr1 244462947 rs184038301 G A
CTCF RAD21 RCOR1 SMC3 SP1
1088759
chr1 244463048 rs574325758 G A
CTCF ELF1 GABPA RAD21 RCOR1 SMC3
1088760
chr1 244463058 rs78375075 C G
CTCF FOXF2 FOXH1 FOXI1 FOXP1 FOXP2 RCOR1 SMC3
1088761
Genes possibly regulated by vista5887[chr1:244462616-244463099]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 244515937 244552965 + C1orf100 ENSG00000173728.6 244515937 0.83 1.0 2004 47162
Expression level of Genes
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miRNAs possibly regulated by vista5887[chr1:244462616-244463099]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results