EnhancerDB
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  3. vista628[chr1:20204786-20204981]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista628[chr1:20204786-20204981]
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Tissue distribution of vista628
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Transcription factor that possibly regulate vista628[chr1:20204786-20204981]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 20204817 20204828 CDX2 JASPAR yes 118243973
chr1 20204836 20204846 SP1 JASPAR yes 118243974
chr1 20204837 20204842 SP1 TRANSFAC yes 118243975
chr1 20204846 20204859 POU2F2 JASPAR yes 118243976
chr1 20204846 20204860 POU1F1 JASPAR yes 118243977
chr1 20204847 20204859 POU3F1 JASPAR yes 118243978
chr1 20204847 20204859 POU3F2 JASPAR yes 118243979
chr1 20204848 20204860 POU2F1 JASPAR yes 118243980
chr1 20204849 20204858 POU3F4 JASPAR yes 118243981
chr1 20204849 20204858 POU5F1B JASPAR yes 118243982
chr1 20204850 20204858 FOXL1 JASPAR yes 118243983
chr1 20204867 20204872 NFY TRANSFAC yes 118243984
chr1 20204870 20204889 PAX5 JASPAR yes 118243985
chr1 20204873 20204890 PAX1 JASPAR yes 118243986
chr1 20204877 20204886 SNAI2 JASPAR yes 118243987
chr1 20204879 20204888 ZEB1 JASPAR yes 118243988
chr1 20204879 20204889 TBX21 JASPAR yes 118243989
chr1 20204879 20204890 TBX2 JASPAR yes 118243990
chr1 20204879 20204892 EOMES JASPAR yes 118243991
chr1 20204880 20204888 MGA JASPAR yes 118243992
chr1 20204880 20204888 TBX15 JASPAR yes 118243993
chr1 20204880 20204888 TBX1 JASPAR yes 118243994
chr1 20204880 20204888 TBX4 JASPAR yes 118243995
chr1 20204880 20204888 TBX5 JASPAR yes 118243996
chr1 20204880 20204890 TBR1 JASPAR yes 118243997
chr1 20204886 20204899 POU2F2 JASPAR yes 118243998
chr1 20204887 20204898 FOXB1 JASPAR yes 118243999
chr1 20204887 20204898 FOXC1 JASPAR yes 118244000
chr1 20204887 20204899 POU3F1 JASPAR yes 118244001
chr1 20204887 20204899 POU3F2 JASPAR yes 118244002
chr1 20204888 20204892 YY1 TRANSFAC yes 118244003
chr1 20204888 20204900 POU2F1 JASPAR yes 118244004
chr1 20204889 20204898 POU3F4 JASPAR yes 118244005
chr1 20204889 20204898 POU5F1B JASPAR yes 118244006
chr1 20204890 20204898 FOXL1 JASPAR yes 118244007
chr1 20204901 20204906 ETS2 TRANSFAC yes 118244008
chr1 20204913 20204919 MZF1 JASPAR yes 118244009
chr1 20204922 20204933 PHOX2A JASPAR yes 118244010
chr1 20204922 20204933 PROP1 JASPAR yes 118244011
chr1 20204929 20204941 POU2F1 JASPAR yes 118244012
chr1 20204929 20204942 POU3F3 JASPAR yes 118244013
chr1 20204929 20204943 POU1F1 JASPAR yes 118244014
chr1 20204930 20204942 POU3F1 JASPAR yes 118244015
chr1 20204930 20204942 POU3F2 JASPAR yes 118244016
chr1 20204930 20204943 POU2F2 JASPAR yes 118244017
chr1 20204930 20204945 FOXA1 JASPAR yes 118244018
chr1 20204931 20204939 POU2F1 TRANSFAC yes 118244019
chr1 20204931 20204940 POU3F4 JASPAR yes 118244020
chr1 20204931 20204940 POU5F1B JASPAR yes 118244021
chr1 20204931 20204942 FOXB1 JASPAR yes 118244022
chr1 20204931 20204942 FOXC1 JASPAR yes 118244023
chr1 20204931 20204943 FOXC2 JASPAR yes 118244024
chr1 20204932 20204939 POU2F1 TRANSFAC yes 118244025
chr1 20204932 20204939 POU2F2 TRANSFAC yes 118244026
chr1 20204944 20204949 GATA2 JASPAR yes 118244027
chr1 20204949 20204955 NFIC JASPAR yes 118244028
chr1 20204957 20204961 NFE TRANSFAC yes 118244029
chr1 20204957 20204962 GATA1 TRANSFAC yes 118244030
chr1 20204957 20204963 GATA3 JASPAR yes 118244031
SNP sites on vista628[chr1:20204786-20204981]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 20204873 rs149554826 G A
PAX1 PAX5
135740
chr1 20204884 rs571830210 TG T
EOMES MGA PAX1 PAX5 SNAI2 TBR1 TBX1 TBX15 TBX2 TBX21 TBX4 TBX5 ZEB1
135741
Genes possibly regulated by vista628[chr1:20204786-20204981]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 20008706 20126438 - TMCO4 ENSG00000162542.9 20126438 0.68 1.0 267 21652
chr1 20140523 20141771 - RNF186 ENSG00000178828.5 20141771 0.97 0.0 268 36985
chr1 20209006 20239438 + OTUD3 ENSG00000169914.5 20209006 0.7 1.0 269 95975
chr1 20246502 20250110 - PLA2G2E ENSG00000188784.4 20250110 0.0 0.0 270 54871
Expression level of Genes
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miRNAs possibly regulated by vista628[chr1:20204786-20204981]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results