EnhancerDB
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  3. vista899[chr1:27353661-27353962]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista899[chr1:27353661-27353962]
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Tissue distribution of vista899
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Transcription factor that possibly regulate vista899[chr1:27353661-27353962]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 27353650 27353665 TFAP2A JASPAR yes 27670002
chr1 27353650 27353665 TFAP2A JASPAR yes 118257014
chr1 27353687 27353704 RARA JASPAR yes 27670003
chr1 27353687 27353704 RARA JASPAR yes 118257015
chr1 27353701 27353711 SP1 JASPAR yes 27670004
chr1 27353701 27353711 SP1 JASPAR yes 118257016
chr1 27353719 27353725 YY1 JASPAR yes 27670005
chr1 27353719 27353725 YY1 JASPAR yes 118257017
chr1 27353725 27353735 RUNX3 JASPAR yes 27670006
chr1 27353725 27353735 RUNX3 JASPAR yes 118257018
chr1 27353740 27353745 SP1 TRANSFAC yes 27670007
chr1 27353740 27353745 SP1 TRANSFAC yes 118257019
chr1 27353795 27353806 FOXP2 JASPAR yes 27670008
chr1 27353795 27353806 FOXP2 JASPAR yes 118257020
chr1 27353797 27353805 FOXO3 JASPAR yes 27670009
chr1 27353797 27353805 FOXO3 JASPAR yes 118257021
chr1 27353829 27353837 FOXO3 JASPAR yes 27670010
chr1 27353829 27353837 FOXO3 JASPAR yes 118257022
chr1 27353832 27353838 HiNF-A TRANSFAC yes 27670011
chr1 27353832 27353838 HiNF-A TRANSFAC yes 118257023
chr1 27353834 27353854 TP63 JASPAR yes 27670012
chr1 27353834 27353854 TP63 JASPAR yes 118257024
chr1 27353835 27353853 TP53 JASPAR yes 27670013
chr1 27353835 27353853 TP63 JASPAR yes 27670014
chr1 27353835 27353853 TP73 JASPAR yes 27670015
chr1 27353835 27353853 TP53 JASPAR yes 118257025
chr1 27353835 27353853 TP63 JASPAR yes 118257026
chr1 27353835 27353853 TP73 JASPAR yes 118257027
chr1 27353836 27353851 TP53 JASPAR yes 27670016
chr1 27353836 27353851 TP53 JASPAR yes 118257028
chr1 27353836 27353856 TP53 JASPAR yes 27670017
chr1 27353836 27353856 TP53 JASPAR yes 118257029
chr1 27353837 27353852 TP53 JASPAR yes 27670018
chr1 27353837 27353852 TP53 JASPAR yes 118257030
chr1 27353843 27353857 BATF3 JASPAR yes 27670019
chr1 27353843 27353857 BATF3 JASPAR yes 118257031
chr1 27353844 27353859 JUND JASPAR yes 27670020
chr1 27353844 27353859 JUND JASPAR yes 118257032
chr1 27353852 27353856 YY1 TRANSFAC yes 27670021
chr1 27353852 27353856 YY1 TRANSFAC yes 118257033
chr1 27353871 27353875 YY1 TRANSFAC yes 27670022
chr1 27353871 27353875 YY1 TRANSFAC yes 118257034
chr1 27353893 27353903 SP1 JASPAR yes 27670023
chr1 27353893 27353903 SP1 JASPAR yes 118257035
chr1 27353893 27353914 ZNF263 JASPAR yes 27670024
chr1 27353893 27353914 ZNF263 JASPAR yes 118257036
chr1 27353894 27353915 ZNF263 JASPAR yes 27670025
chr1 27353894 27353915 ZNF263 JASPAR yes 118257037
chr1 27353920 27353924 LFA1 TRANSFAC yes 27670026
chr1 27353920 27353924 LFA1 TRANSFAC yes 118257038
chr1 27353935 27353956 ZNF263 JASPAR yes 27670027
chr1 27353935 27353956 ZNF263 JASPAR yes 118257039
chr1 27353936 27353949 ZBTB18 JASPAR yes 27670028
chr1 27353936 27353949 ZBTB18 JASPAR yes 118257040
SNP sites on vista899[chr1:27353661-27353962]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 27353743 rs370357296 G A
SP1
183482
Genes possibly regulated by vista899[chr1:27353661-27353962]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 27276053 27286897 - C1orf172 ENSG00000175707.7 27286897 0.8 1.0 381 33236
chr1 27320198 27327389 + TRNP1 ENSG00000253368.3 27320198 0.89 0.99 382 66537
chr1 27331511 27339327 - FAM46B ENSG00000158246.7 27339327 0.95 1.0 383 85666
Expression level of Genes
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miRNAs possibly regulated by vista899[chr1:27353661-27353962]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results