EnhancerDB
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  3. vista953[chr1:28098635-28098880]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista953[chr1:28098635-28098880]
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Tissue distribution of vista953
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Transcription factor that possibly regulate vista953[chr1:28098635-28098880]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28098635 28098648 POU2F2 JASPAR yes 118260261
chr1 28098643 28098647 YY1 TRANSFAC yes 118260262
chr1 28098644 28098654 NFATC3 JASPAR yes 118260263
chr1 28098645 28098652 NFATC2 JASPAR yes 118260264
chr1 28098658 28098664 SOX10 JASPAR yes 118260265
chr1 28098660 28098681 ZNF263 JASPAR yes 118260266
chr1 28098664 28098684 RREB1 JASPAR yes 118260267
chr1 28098665 28098685 RREB1 JASPAR yes 118260268
chr1 28098667 28098687 RREB1 JASPAR yes 118260269
chr1 28098669 28098689 RREB1 JASPAR yes 118260270
chr1 28098669 28098690 ZNF263 JASPAR yes 118260271
chr1 28098670 28098680 SP1 JASPAR yes 118260272
chr1 28098670 28098690 RREB1 JASPAR yes 118260273
chr1 28098671 28098691 RREB1 JASPAR yes 118260274
chr1 28098672 28098677 SP1 TRANSFAC yes 118260275
chr1 28098672 28098692 RREB1 JASPAR yes 118260276
chr1 28098674 28098694 RREB1 JASPAR yes 118260277
chr1 28098674 28098695 ZNF263 JASPAR yes 118260278
chr1 28098675 28098685 SP1 JASPAR yes 118260279
chr1 28098677 28098682 SP1 TRANSFAC yes 118260280
chr1 28098680 28098690 SP1 JASPAR yes 118260281
chr1 28098682 28098687 SP1 TRANSFAC yes 118260282
chr1 28098696 28098707 ETV2 JASPAR yes 118260283
chr1 28098697 28098707 ERG JASPAR yes 118260284
chr1 28098697 28098707 ETS1 JASPAR yes 118260285
chr1 28098697 28098707 FLI1 JASPAR yes 118260286
chr1 28098697 28098708 FLI1 JASPAR yes 118260287
chr1 28098715 28098730 PRDM1 JASPAR yes 118260288
chr1 28098731 28098735 NFE TRANSFAC yes 118260289
chr1 28098731 28098736 GATA1 TRANSFAC yes 118260290
chr1 28098731 28098737 GATA3 JASPAR yes 118260291
chr1 28098748 28098763 RUNX2 JASPAR yes 118260292
chr1 28098768 28098773 ETS2 TRANSFAC yes 118260293
chr1 28098775 28098778 MYB TRANSFAC yes 118260294
chr1 28098807 28098822 AR JASPAR yes 118260295
chr1 28098813 28098823 RORA JASPAR yes 118260296
chr1 28098815 28098823 CREB1 JASPAR yes 118260297
chr1 28098818 28098822 ESR1 TRANSFAC yes 118260298
chr1 28098822 28098838 POU4F2 JASPAR yes 118260299
chr1 28098823 28098833 TEAD1 JASPAR yes 118260300
chr1 28098823 28098833 TEAD4 JASPAR yes 118260301
chr1 28098823 28098835 TEAD1 JASPAR yes 118260302
chr1 28098824 28098832 TEAD3 JASPAR yes 118260303
chr1 28098834 28098841 NKX3-1 JASPAR yes 118260304
SNP sites on vista953[chr1:28098635-28098880]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28098672 rs182041143 G C
RREB1 SP1 ZNF263
188331
chr1 28098731 rs187277738 A G
GATA1 GATA3 NFE
188332
chr1 28098763 rs546420746 A G
RUNX2
188333
Genes possibly regulated by vista953[chr1:28098635-28098880]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 27992572 27998729 - IFI6 ENSG00000126709.10 27998729 0.76 1.0 395 94
chr1 28052490 28089633 + FAM76A ENSG00000009780.11 28052490 0.57 0.99 396 53855
chr1 28099694 28150963 + STX12 ENSG00000117758.9 28099694 0.77 0.99 397 99186
chr1 28157289 28178187 + PPP1R8 ENSG00000117751.13 28157289 0.57 0.99 398 41591
chr1 28177085 28177255 - AL109927.1 ENSG00000268552.1 28177255 0.0 1.0 399 21625
Expression level of Genes
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miRNAs possibly regulated by vista953[chr1:28098635-28098880]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results