EnhancerDB
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  3. vista955[chr1:28152962-28153213]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista955[chr1:28152962-28153213]
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Tissue distribution of vista955
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Transcription factor that possibly regulate vista955[chr1:28152962-28153213]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28152962 28152977 RUNX2 JASPAR yes 118260330
chr1 28152962 28152978 RFX2 JASPAR yes 118260331
chr1 28152962 28152978 RFX3 JASPAR yes 118260332
chr1 28152962 28152978 RFX4 JASPAR yes 118260333
chr1 28152962 28152978 RFX5 JASPAR yes 118260334
chr1 28152984 28152995 NFKB1 JASPAR yes 118260335
chr1 28152985 28153000 HSF1 JASPAR yes 118260336
chr1 28152986 28152999 HSF1 JASPAR yes 118260337
chr1 28152986 28152999 HSF2 JASPAR yes 118260338
chr1 28152986 28152999 HSF4 JASPAR yes 118260339
chr1 28153001 28153016 HSF1 JASPAR yes 118260340
chr1 28153002 28153015 HSF1 JASPAR yes 118260341
chr1 28153002 28153015 HSF2 JASPAR yes 118260342
chr1 28153002 28153015 HSF4 JASPAR yes 118260343
chr1 28153026 28153040 EBF1 JASPAR yes 118260344
chr1 28153028 28153039 EBF1 JASPAR yes 118260345
chr1 28153033 28153053 RREB1 JASPAR yes 118260346
chr1 28153035 28153055 RREB1 JASPAR yes 118260347
chr1 28153037 28153057 RREB1 JASPAR yes 118260348
chr1 28153039 28153059 RREB1 JASPAR yes 118260349
chr1 28153041 28153061 RREB1 JASPAR yes 118260350
chr1 28153043 28153063 RREB1 JASPAR yes 118260351
chr1 28153045 28153065 RREB1 JASPAR yes 118260352
chr1 28153047 28153067 RREB1 JASPAR yes 118260353
chr1 28153049 28153069 RREB1 JASPAR yes 118260354
chr1 28153051 28153071 RREB1 JASPAR yes 118260355
chr1 28153053 28153073 RREB1 JASPAR yes 118260356
chr1 28153055 28153075 RREB1 JASPAR yes 118260357
chr1 28153057 28153077 RREB1 JASPAR yes 118260358
chr1 28153059 28153079 RREB1 JASPAR yes 118260359
chr1 28153061 28153081 RREB1 JASPAR yes 118260360
chr1 28153063 28153083 RREB1 JASPAR yes 118260361
chr1 28153099 28153105 MAZ TRANSFAC yes 118260362
chr1 28153107 28153119 ZBTB7B JASPAR yes 118260363
chr1 28153124 28153139 LEF1 JASPAR yes 118260364
chr1 28153125 28153146 IRF1 JASPAR yes 118260365
chr1 28153128 28153142 IRF7 JASPAR yes 118260366
chr1 28153132 28153143 PHOX2A JASPAR yes 118260367
chr1 28153132 28153143 PROP1 JASPAR yes 118260368
chr1 28153138 28153146 HOXA5 JASPAR yes 118260369
chr1 28153151 28153163 POU2F1 JASPAR yes 118260370
chr1 28153151 28153165 POU1F1 JASPAR yes 118260371
chr1 28153153 28153162 POU3F4 JASPAR yes 118260372
chr1 28153153 28153162 POU5F1B JASPAR yes 118260373
chr1 28153155 28153161 TCF4 TRANSFAC yes 118260374
chr1 28153157 28153169 IRF1 JASPAR yes 118260375
chr1 28153171 28153182 FOSL2 JASPAR yes 118260376
chr1 28153185 28153193 ISL2 JASPAR yes 118260377
chr1 28153185 28153194 NKX3-2 JASPAR yes 118260378
chr1 28153186 28153207 IRF1 JASPAR yes 118260379
chr1 28153187 28153208 IRF1 JASPAR yes 118260380
chr1 28153191 28153203 IRF1 JASPAR yes 118260381
chr1 28153192 28153213 IRF1 JASPAR yes 118260382
chr1 28153193 28153199 TCF4 TRANSFAC yes 118260383
chr1 28153193 28153208 FOXP1 JASPAR yes 118260384
chr1 28153194 28153205 FOXP2 JASPAR yes 118260385
chr1 28153194 28153206 FOXC2 JASPAR yes 118260386
chr1 28153194 28153209 STAT2 JASPAR yes 118260387
chr1 28153195 28153210 FOXP1 JASPAR yes 118260388
chr1 28153197 28153212 FOXP1 JASPAR yes 118260389
chr1 28153198 28153213 FOXP1 JASPAR yes 118260390
SNP sites on vista955[chr1:28152962-28153213]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28153020 rs145767823 G A no 188548
chr1 28153089 rs148943029 G A no 188549
Genes possibly regulated by vista955[chr1:28152962-28153213]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28099694 28150963 + STX12 ENSG00000117758.9 28099694 0.77 0.99 397 46732
chr1 28157289 28178187 + PPP1R8 ENSG00000117751.13 28157289 0.57 0.99 398 95924
chr1 28177085 28177255 - AL109927.1 ENSG00000268552.1 28177255 0.0 1.0 399 75958
chr1 28199055 28213196 + THEMIS2 ENSG00000130775.11 28199055 0.93 1.0 400 54158
chr1 28218035 28241257 - RPA2 ENSG00000117748.5 28241257 0.76 0.99 401 11956
Expression level of Genes
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miRNAs possibly regulated by vista955[chr1:28152962-28153213]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results