EnhancerDB
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  3. vista959[chr1:28199684-28200598]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista959[chr1:28199684-28200598]
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Tissue distribution of vista959
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Transcription factor that possibly regulate vista959[chr1:28199684-28200598]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28199685 28199696 YY2 JASPAR yes 118260629
chr1 28199690 28199701 FLI1 JASPAR yes 118260630
chr1 28199697 28199709 ELF1 JASPAR yes 118260631
chr1 28199697 28199709 ELF4 JASPAR yes 118260632
chr1 28199699 28199708 ELK4 JASPAR yes 118260633
chr1 28199699 28199709 GABPA JASPAR yes 118260634
chr1 28199699 28199710 ELK4 JASPAR yes 118260635
chr1 28199701 28199707 ETS1 JASPAR yes 118260636
chr1 28199701 28199707 SPI1 JASPAR yes 118260637
chr1 28199707 28199715 EHF JASPAR yes 118260638
chr1 28199712 28199725 SMAD2 JASPAR yes 118260639
chr1 28199731 28199736 SP1 TRANSFAC yes 118260640
chr1 28199752 28199761 THAP1 JASPAR yes 118260641
chr1 28199781 28199785 LFA1 TRANSFAC yes 118260642
chr1 28199812 28199827 TFAP2C JASPAR yes 118260643
chr1 28199818 28199839 ZNF263 JASPAR yes 118260644
chr1 28199821 28199842 ZNF263 JASPAR yes 118260645
chr1 28199840 28199843 MYB TRANSFAC yes 118260646
chr1 28199843 28199862 CTCF JASPAR yes 118260647
chr1 28199853 28199863 SP1 JASPAR yes 118260648
chr1 28199854 28199858 LFA1 TRANSFAC yes 118260649
chr1 28199874 28199880 ZNF354C JASPAR yes 118260650
chr1 28199898 28199907 THAP1 JASPAR yes 118260651
chr1 28199899 28199909 SP1 JASPAR yes 118260652
chr1 28199901 28199905 LFA1 TRANSFAC yes 118260653
chr1 28199911 28199925 PLAG1 JASPAR yes 118260654
chr1 28199928 28199938 MZF1 JASPAR yes 118260655
chr1 28199930 28199951 ZNF263 JASPAR yes 118260656
chr1 28199932 28199953 ZNF263 JASPAR yes 118260657
chr1 28199933 28199954 ZNF263 JASPAR yes 118260658
chr1 28199936 28199957 ZNF263 JASPAR yes 118260659
chr1 28199939 28199960 ZNF263 JASPAR yes 118260660
chr1 28199945 28199966 ZNF263 JASPAR yes 118260661
chr1 28199952 28199972 RREB1 JASPAR yes 118260662
chr1 28199961 28199971 ZNF740 JASPAR yes 118260663
chr1 28199963 28199973 ZNF740 JASPAR yes 118260664
chr1 28199968 28199978 GCM2 JASPAR yes 118260665
chr1 28199968 28199979 GCM1 JASPAR yes 118260666
chr1 28199976 28199981 ETS2 TRANSFAC yes 118260667
chr1 28199978 28199986 EHF JASPAR yes 118260668
chr1 28199980 28199985 ETS2 TRANSFAC yes 118260669
chr1 28199994 28200008 PAX6 JASPAR yes 118260670
chr1 28200008 28200028 TP63 JASPAR yes 118260671
chr1 28200009 28200018 SP1 TRANSFAC yes 118260672
chr1 28200012 28200018 NFE2 TRANSFAC yes 118260673
chr1 28200048 28200052 NFE TRANSFAC yes 118260674
chr1 28200051 28200063 NHLH1 JASPAR yes 118260675
chr1 28200055 28200070 HSF1 JASPAR yes 118260676
chr1 28200079 28200083 H4TF2 TRANSFAC yes 118260677
chr1 28200091 28200095 H4TF2 TRANSFAC yes 118260678
chr1 28200107 28200111 H4TF2 TRANSFAC yes 118260679
chr1 28200120 28200134 PLAG1 JASPAR yes 118260680
chr1 28200121 28200125 H4TF2 TRANSFAC yes 118260681
chr1 28200122 28200137 ZIC3 JASPAR yes 118260682
chr1 28200122 28200137 ZIC4 JASPAR yes 118260683
chr1 28200131 28200136 SP1 TRANSFAC yes 118260684
chr1 28200141 28200155 GLIS2 JASPAR yes 118260685
chr1 28200180 28200194 NR2F1 JASPAR yes 118260686
chr1 28200198 28200205 JUN TRANSFAC yes 118260687
chr1 28200203 28200218 TFAP2C JASPAR yes 118260688
chr1 28200206 28200217 EBF1 JASPAR yes 118260689
chr1 28200213 28200223 NFKB1 JASPAR yes 118260690
chr1 28200223 28200234 FLI1 JASPAR yes 118260691
chr1 28200224 28200232 EHF JASPAR yes 118260692
chr1 28200239 28200254 FOXA1 JASPAR yes 118260693
chr1 28200243 28200254 FOXA1 JASPAR yes 118260694
chr1 28200252 28200264 INSM1 JASPAR yes 118260695
chr1 28200311 28200323 TAL1 JASPAR yes 118260696
chr1 28200312 28200327 SCRT1 JASPAR yes 118260697
chr1 28200313 28200323 FIGLA JASPAR yes 118260698
chr1 28200313 28200323 ID4 JASPAR yes 118260699
chr1 28200313 28200323 MSC JASPAR yes 118260700
chr1 28200313 28200323 MYF6 JASPAR yes 118260701
chr1 28200313 28200323 TCF3 JASPAR yes 118260702
chr1 28200313 28200323 TCF4 JASPAR yes 118260703
chr1 28200313 28200323 TFAP4 JASPAR yes 118260704
chr1 28200314 28200323 SNAI2 JASPAR yes 118260705
chr1 28200314 28200327 SCRT2 JASPAR yes 118260706
chr1 28200315 28200320 USF2 TRANSFAC yes 118260707
chr1 28200316 28200322 PTF TRANSFAC yes 118260708
chr1 28200319 28200332 ATF4 JASPAR yes 118260709
chr1 28200320 28200333 JUN JASPAR yes 118260710
chr1 28200344 28200365 ZNF263 JASPAR yes 118260711
chr1 28200400 28200420 RREB1 JASPAR yes 118260712
chr1 28200404 28200424 RREB1 JASPAR yes 118260713
chr1 28200413 28200423 SREBF1 JASPAR yes 118260714
chr1 28200413 28200423 SREBF2 JASPAR yes 118260715
chr1 28200430 28200440 NEUROG2 JASPAR yes 118260716
chr1 28200430 28200442 TAL1 JASPAR yes 118260717
chr1 28200434 28200440 YY1 JASPAR yes 118260718
chr1 28200442 28200448 NFIC JASPAR yes 118260719
chr1 28200444 28200448 H1TF2 TRANSFAC yes 118260720
chr1 28200444 28200448 NFE TRANSFAC yes 118260721
chr1 28200444 28200448 SRF TRANSFAC yes 118260722
chr1 28200444 28200450 NFYC TRANSFAC yes 118260723
chr1 28200450 28200461 NRF1 JASPAR yes 118260724
chr1 28200451 28200455 LFA1 TRANSFAC yes 118260725
chr1 28200451 28200471 TP63 JASPAR yes 118260726
chr1 28200466 28200470 LFA1 TRANSFAC yes 118260727
chr1 28200538 28200559 IRF1 JASPAR yes 118260728
chr1 28200539 28200560 IRF1 JASPAR yes 118260729
chr1 28200540 28200555 STAT2 JASPAR yes 118260730
chr1 28200543 28200558 FOXP1 JASPAR yes 118260731
chr1 28200544 28200559 FOXP1 JASPAR yes 118260732
chr1 28200545 28200560 FOXP1 JASPAR yes 118260733
chr1 28200546 28200561 FOXP1 JASPAR yes 118260734
chr1 28200547 28200562 FOXP1 JASPAR yes 118260735
chr1 28200548 28200563 FOXP1 JASPAR yes 118260736
chr1 28200549 28200564 FOXP1 JASPAR yes 118260737
chr1 28200569 28200588 PAX5 JASPAR yes 118260738
SNP sites on vista959[chr1:28199684-28200598]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28199752 rs147243317 T C
THAP1
188780
chr1 28199863 rs11247699 T G
SP1
188781
chr1 28199966 rs11587360 G A
RREB1 ZNF263 ZNF740
188782
chr1 28200053 rs139813982 C T
NHLH1
188783
chr1 28200054 rs377421305 GCAGCAGCTTC G
NHLH1
188784
chr1 28200054 rs532073025 GCAGCAGCTTC G
NHLH1
188785
chr1 28200199 rs149792868 C G
JUN
188786
chr1 28200234 rs145746741 G A
FLI1
188787
chr1 28200279 rs116188630 T C no 188788
chr1 28200280 rs565473774 C T no 188789
chr1 28200343 rs148985873 G A no 188790
chr1 28200519 rs144361575 G A no 188791
chr1 28200529 rs7511927 C G,T no 188792
chr1 28200570 rs146637443 G A
PAX5
188793
Genes possibly regulated by vista959[chr1:28199684-28200598]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28099694 28150963 + STX12 ENSG00000117758.9 28099694 0.77 0.99 397 10
chr1 28157289 28178187 + PPP1R8 ENSG00000117751.13 28157289 0.57 0.99 398 57605
chr1 28177085 28177255 - AL109927.1 ENSG00000268552.1 28177255 0.0 1.0 399 77571
chr1 28199055 28213196 + THEMIS2 ENSG00000130775.11 28199055 0.93 1.0 400 99371
chr1 28218035 28241257 - RPA2 ENSG00000117748.5 28241257 0.76 0.99 401 59341
chr1 28261504 28285668 + SMPDL3B ENSG00000130768.10 28261504 0.87 1.0 402 39094
chr1 28285973 28294607 + XKR8 ENSG00000158156.7 28285973 0.65 1.0 403 14625
Expression level of Genes
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miRNAs possibly regulated by vista959[chr1:28199684-28200598]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results