EnhancerDB
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  3. vista960[chr1:28201800-28202156]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista960[chr1:28201800-28202156]
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Tissue distribution of vista960
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Transcription factor that possibly regulate vista960[chr1:28201800-28202156]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28201800 28201804 YY1 TRANSFAC yes 118260739
chr1 28201802 28201823 IRF1 JASPAR yes 118260740
chr1 28201804 28201812 FEV JASPAR yes 118260741
chr1 28201804 28201819 IRF9 JASPAR yes 118260742
chr1 28201805 28201819 IRF7 JASPAR yes 118260743
chr1 28201805 28201819 IRF8 JASPAR yes 118260744
chr1 28201806 28201820 STAT1 JASPAR yes 118260745
chr1 28201806 28201821 PRDM1 JASPAR yes 118260746
chr1 28201806 28201821 STAT2 JASPAR yes 118260747
chr1 28201807 28201819 IRF1 JASPAR yes 118260748
chr1 28201810 28201815 MYB TRANSFAC yes 118260749
chr1 28201821 28201825 NFE TRANSFAC yes 118260750
chr1 28201829 28201844 TP53 JASPAR yes 118260751
chr1 28201850 28201856 HiNF-A TRANSFAC yes 118260752
chr1 28201856 28201867 NFE2 JASPAR yes 118260753
chr1 28201868 28201887 REST JASPAR yes 118260754
chr1 28201873 28201883 NFIA JASPAR yes 118260755
chr1 28201874 28201883 NFIX JASPAR yes 118260756
chr1 28201875 28201881 NFIC JASPAR yes 118260757
chr1 28201875 28201889 TLX1 JASPAR yes 118260758
chr1 28201876 28201890 TLX1 JASPAR yes 118260759
chr1 28201890 28201895 GATA1 TRANSFAC yes 118260760
chr1 28201902 28201914 NHLH1 JASPAR yes 118260761
chr1 28201903 28201913 MSC JASPAR yes 118260762
chr1 28201903 28201913 NHLH1 JASPAR yes 118260763
chr1 28201903 28201913 TFAP4 JASPAR yes 118260764
chr1 28201919 28201937 ESR1 JASPAR yes 118260765
chr1 28201944 28201959 FOXP1 JASPAR yes 118260766
chr1 28201945 28201956 FOXA1 JASPAR yes 118260767
chr1 28201945 28201960 FOXA1 JASPAR yes 118260768
chr1 28201947 28201958 FOXP2 JASPAR yes 118260769
chr1 28201948 28201956 FOXO3 JASPAR yes 118260770
chr1 28201949 28201956 FOXD2 JASPAR yes 118260771
chr1 28201949 28201956 FOXI1 JASPAR yes 118260772
chr1 28201949 28201956 FOXL1 JASPAR yes 118260773
chr1 28201949 28201956 FOXO4 JASPAR yes 118260774
chr1 28201949 28201956 FOXO6 JASPAR yes 118260775
chr1 28201949 28201956 FOXP3 JASPAR yes 118260776
chr1 28201949 28201957 FOXD1 JASPAR yes 118260777
chr1 28201949 28201957 FOXO3 JASPAR yes 118260778
chr1 28201956 28201967 RUNX1 JASPAR yes 118260779
chr1 28201957 28201967 RUNX3 JASPAR yes 118260780
chr1 28201958 28201967 RUNX2 JASPAR yes 118260781
chr1 28201962 28201972 HOXC10 JASPAR yes 118260782
chr1 28201962 28201973 HOXA10 JASPAR yes 118260783
chr1 28201962 28201973 HOXC11 JASPAR yes 118260784
chr1 28201962 28201973 HOXC12 JASPAR yes 118260785
chr1 28201962 28201973 HOXD12 JASPAR yes 118260786
chr1 28201963 28201972 CDX1 JASPAR yes 118260787
chr1 28201963 28201974 CDX2 JASPAR yes 118260788
chr1 28201973 28201978 SP1 TRANSFAC yes 118260789
chr1 28201973 28201982 HIC2 JASPAR yes 118260790
chr1 28201976 28201980 LFA1 TRANSFAC yes 118260791
chr1 28201979 28201983 YY1 TRANSFAC yes 118260792
chr1 28201980 28201995 STAT1 JASPAR yes 118260793
chr1 28201982 28201993 STAT1 JASPAR yes 118260794
chr1 28201982 28201993 STAT3 JASPAR yes 118260795
chr1 28201997 28202002 TFAP2A TRANSFAC yes 118260796
chr1 28201997 28202003 MZF1 JASPAR yes 118260797
chr1 28202035 28202051 ZNF143 JASPAR yes 118260798
chr1 28202038 28202053 TFAP2A JASPAR yes 118260799
chr1 28202039 28202058 REST JASPAR yes 118260800
chr1 28202044 28202054 SP1 JASPAR yes 118260801
chr1 28202047 28202052 SP1 TRANSFAC yes 118260802
chr1 28202050 28202060 SP1 JASPAR yes 118260803
chr1 28202074 28202078 H4TF2 TRANSFAC yes 118260804
chr1 28202078 28202092 CREB3 JASPAR yes 118260805
chr1 28202078 28202092 CREB3L1 JASPAR yes 118260806
chr1 28202095 28202106 YY2 JASPAR yes 118260807
chr1 28202101 28202105 YY1 TRANSFAC yes 118260808
SNP sites on vista960[chr1:28201800-28202156]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28201891 rs138421383 G T
GATA1
188807
chr1 28201931 rs1013500230 AG A
ESR1
188808
chr1 28201931 rs146525519 AG A
ESR1
188809
chr1 28201987 rs61789661 C T
STAT1 STAT3
188810
chr1 28202025 rs74628087 G A no 188811
chr1 28202076 rs142806594 G A
H4TF2
188812
chr1 28202138 rs147403677 C T no 188813
Genes possibly regulated by vista960[chr1:28201800-28202156]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28157289 28178187 + PPP1R8 ENSG00000117751.13 28157289 0.57 0.99 398 55489
chr1 28177085 28177255 - AL109927.1 ENSG00000268552.1 28177255 0.0 1.0 399 75455
chr1 28199055 28213196 + THEMIS2 ENSG00000130775.11 28199055 0.93 1.0 400 97255
chr1 28218035 28241257 - RPA2 ENSG00000117748.5 28241257 0.76 0.99 401 60899
chr1 28261504 28285668 + SMPDL3B ENSG00000130768.10 28261504 0.87 1.0 402 40652
chr1 28285973 28294607 + XKR8 ENSG00000158156.7 28285973 0.65 1.0 403 16183
Expression level of Genes
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miRNAs possibly regulated by vista960[chr1:28201800-28202156]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results