-
Home
- SNP
- rs10580939[chr16:88020172]
Enhancers that have rs10580939[chr16:88020172]
Back to top
| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr16 |
88018113 |
88022526 |
enh32026 |
|
|
| chr16 |
88019994 |
88020330 |
vista23477 |
|
|
Transcript factors that have rs10580939[chr16:88020172]
Back to top
| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr16
|
88019095
|
88020250
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108221765
|
|
|
chr16
|
88019313
|
88020249
|
AR
|
GTRD
|
no
|
Prostate (PC-3)
|
108221767
|
|
|
chr16
|
88019383
|
88021644
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108221769
|
|
|
chr16
|
88019661
|
88021864
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221771
|
|
|
chr16
|
88019736
|
88020845
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221772
|
|
|
chr16
|
88020129
|
88021865
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108221773
|
|
|
chr16
|
88020141
|
88020730
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
21735404
|
|
|
chr16
|
88020141
|
88020730
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108221774
|
|
|
chr16
|
88020172
|
88020186
|
GATA2
|
JASPAR
|
yes
|
|
12255279
|
|
|
chr16
|
88020172
|
88020186
|
GATA2
|
JASPAR
|
yes
|
|
49416623
|
|
Genes associated with rs10580939[chr16:88020172], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |