EnhancerDB
  1. Home
  2. SNP
  3. rs116598935[chr5:172730001]
Enhancers that have rs116598935[chr5:172730001]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172714625 172733895 enh22820
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Breast Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Pancreas Spleen Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs116598935[chr5:172730001]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172729332 172730116 TCF7L2 UCSC Txn Factor no Conserved 108537554
chr5 172729460 172730075 TFAP2C UCSC Txn Factor no Conserved 108537555
chr5 172729490 172730094 TFAP2A UCSC Txn Factor no Conserved 108537556
chr5 172729985 172730004 REST JASPAR yes 67865972
Genes associated with rs116598935[chr5:172730001], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More