EnhancerDB
  1. Home
  2. SNP
  3. rs12027894[chr1:236073016]
Enhancers that have rs12027894[chr1:236073016]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 236062005 236089295 enh12805
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs12027894[chr1:236073016]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 236073003 236073016 NFKB1 JASPAR yes 36386528
chr1 236073003 236073016 NFKB2 JASPAR yes 36386529
chr1 236073010 236073020 SP1 JASPAR yes 36386530
chr1 236073011 236073017 SP1 TRANSFAC yes 36386531
chr1 236073011 236073021 SP1 JASPAR yes 36386532
Genes associated with rs12027894[chr1:236073016], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 235824341 236046940 - LYST ENSG00000143669.9 236046940 26076 Stomach 0.000205566 1972