EnhancerDB
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  3. rs12142688[chr1:49342053]
Enhancers that have rs12142688[chr1:49342053]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 49340005 49346470 enh26682
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Lung (A549) Muscle (A673) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs12142688[chr1:49342053]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 49342036 49342054 IRF2 JASPAR yes 28754914
chr1 49342037 49342058 IRF1 JASPAR yes 28754915
chr1 49342039 49342054 PRDM1 JASPAR yes 28754916
chr1 49342039 49342054 STAT2 JASPAR yes 28754917
chr1 49342040 49342054 STAT1 JASPAR yes 28754918
chr1 49342041 49342055 IRF7 JASPAR yes 28754920
chr1 49342041 49342055 IRF8 JASPAR yes 28754921
chr1 49342041 49342056 IRF9 JASPAR yes 28754922
chr1 49342045 49342060 PRDM1 JASPAR yes 28754923
chr1 49342045 49342060 STAT2 JASPAR yes 28754924
chr1 49342046 49342060 STAT1 JASPAR yes 28754925
chr1 49342050 49342055 ETS2 TRANSFAC yes 28754926
chr1 49342053 49342059 TCF4 TRANSFAC yes 28754927
Genes associated with rs12142688[chr1:49342053], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More