EnhancerDB
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  3. rs12725354[chr1:20552612]
Enhancers that have rs12725354[chr1:20552612]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 20552265 20567655 enh11581
Prostate (PC-3) Large Intestine Thyroid Placenta Lung (PC-9) Epithelial (MCF-7)
Transcript factors that have rs12725354[chr1:20552612]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 20552609 20552620 BATF JASPAR yes 27237172
chr1 20552611 20552621 GSX2 JASPAR yes 27237173
chr1 20552611 20552621 HOXB3 JASPAR yes 27237174
chr1 20552611 20552621 MEOX2 JASPAR yes 27237175
chr1 20552611 20552621 MNX1 JASPAR yes 27237176
chr1 20552611 20552622 HOXA10 JASPAR yes 27237177
chr1 20552611 20552622 HOXC11 JASPAR yes 27237178
chr1 20552611 20552622 HOXC12 JASPAR yes 27237179
chr1 20552611 20552622 HOXD12 JASPAR yes 27237180
chr1 20552612 20552620 NKX6-1 JASPAR yes 27237181
chr1 20552612 20552622 HOXC10 JASPAR yes 27237182
chr1 20552612 20552622 HOXD11 JASPAR yes 27237183
Genes associated with rs12725354[chr1:20552612], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More