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- rs12939938[chr17:57046081]
Enhancers that have rs12939938[chr17:57046081]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr17 |
57046055 |
57046358 |
vista25310 |
|
|
Transcript factors that have rs12939938[chr17:57046081]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr17
|
57045231
|
57047127
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275646
|
|
|
chr17
|
57045296
|
57047089
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108275647
|
|
|
chr17
|
57045318
|
57046944
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275648
|
|
|
chr17
|
57045340
|
57046558
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108275649
|
|
|
chr17
|
57045340
|
57047148
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108275650
|
|
|
chr17
|
57045356
|
57047117
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275651
|
|
|
chr17
|
57045367
|
57047055
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275652
|
|
|
chr17
|
57045369
|
57046965
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275653
|
|
|
chr17
|
57045380
|
57046714
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275654
|
|
|
chr17
|
57045395
|
57046736
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108275655
|
|
|
chr17
|
57045576
|
57046605
|
MYOD
|
GTRD
|
no
|
Muscle (Myoblast)
|
108275656
|
|
|
chr17
|
57045714
|
57046165
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275657
|
|
|
chr17
|
57045758
|
57046893
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275658
|
|
|
chr17
|
57045778
|
57046830
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108275659
|
|
|
chr17
|
57045893
|
57046897
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275660
|
|
|
chr17
|
57045960
|
57046813
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108275661
|
|
|
chr17
|
57045989
|
57046482
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275662
|
|
|
chr17
|
57046057
|
57046516
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275663
|
|
|
chr17
|
57046061
|
57046449
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275664
|
|
|
chr17
|
57046063
|
57046922
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108275665
|
|
|
chr17
|
57046069
|
57046439
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Blood (GM12878)
|
108275666
|
|
|
chr17
|
57046080
|
57046090
|
NKX2-3
|
JASPAR
|
yes
|
|
21263432
|
|
|
chr17
|
57046081
|
57046090
|
NKX2-8
|
JASPAR
|
yes
|
|
21263433
|
|
Genes associated with rs12939938[chr17:57046081], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr17
|
57286761
|
57292608
|
+
|
SMG8
|
ENSG00000167447.8
|
57286761
|
240680
|
Thyroid
|
0.051028
|
16100
|
|