EnhancerDB
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  3. rs139498962[chr1:234888057]
Enhancers that have rs139498962[chr1:234888057]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234877045 234913055 enh12796
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139498962[chr1:234888057]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234887823 234888371 ZNF274 GTRD no Liver (HepG2) 21397566
chr1 234887984 234888264 ZNF274 GTRD no Liver (HepG2) 21397567
chr1 234888001 234888650 ZNF143 GTRD no Epithelial (MCF-7) 21397568
chr1 234888042 234888057 ESR2 JASPAR yes 36311353
chr1 234888042 234888062 ESR1 JASPAR yes 36311354
chr1 234888043 234888057 TLX1 JASPAR yes 36311356
Genes associated with rs139498962[chr1:234888057], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More