EnhancerDB
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  3. rs1534962[chr1:209827489]
Enhancers that have rs1534962[chr1:209827489]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209827265 209842715 enh50169
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Large Intestine Esophagus Muscle (A673) Lung (PC-9)
chr1 209827285 209827712 vista4914
VISTA
Transcript factors that have rs1534962[chr1:209827489]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209825789 209828577 ZNF274 GTRD no Bone Marrow (K562) 107866029
chr1 209825957 209828583 ZNF274 GTRD no Bone Marrow (K562) 107866030
chr1 209826738 209828540 ZNF274 GTRD no Bone Marrow (K562) 107866031
chr1 209826783 209828564 ZBTB33 GTRD no Lung (A549) 107866032
chr1 209826842 209828553 ZNF274 GTRD no Bone Marrow (K562) 107866034
chr1 209826851 209828597 ZNF274 GTRD no Bone Marrow (K562) 107866035
chr1 209826861 209829524 ZNF274 GTRD no Bone Marrow (K562) 107866036
chr1 209826861 209829524 ZNF274 GTRD no Bone Marrow (K562) 107866037
chr1 209826861 209829524 ZNF274 GTRD no Bone Marrow (K562) 107866038
chr1 209826971 209828656 ZNF274 GTRD no Bone Marrow (K562) 107866039
chr1 209827142 209828157 ZNF274 GTRD no Bone Marrow (K562) 107866040
chr1 209827157 209827613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21375552
chr1 209827157 209827613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107866041
chr1 209827159 209828393 ZNF274 GTRD no Bone Marrow (K562) 107866042
chr1 209827174 209828527 ZBTB33 GTRD no Lung (A549) 107866043
chr1 209827196 209827655 TCF7L2 GTRD no Colon (HCT116) 107866044
chr1 209827234 209827510 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107866045
chr1 209827236 209828521 ZNF274 GTRD no Bone Marrow (K562) 107866046
chr1 209827241 209828807 TCF7L2 GTRD no Colon (HCT116) 107866047
chr1 209827241 209828807 TCF7L2 GTRD no Colon (HCT116) 107866048
chr1 209827245 209828200 ZNF274 GTRD no Bone Marrow (K562) 107866049
chr1 209827250 209827820 ZNF143 GTRD no Epithelial (MCF-7) 107866050
chr1 209827253 209828724 ZNF143 GTRD no Epithelial (MCF-7) 107866051
chr1 209827255 209828762 ZNF274 GTRD no Cervix (HeLa-S3) 21375553
chr1 209827255 209828762 ZNF274 GTRD no Cervix (HeLa-S3) 107866052
chr1 209827258 209828404 TCF7L2 GTRD no Colon (HCT116) 107866053
chr1 209827262 209828346 ZNF274 GTRD no Bone Marrow (K562) 107866054
chr1 209827263 209828458 ZBTB33 GTRD no Lung (A549) 107866055
chr1 209827265 209828548 ZNF274 GTRD no Bone Marrow (K562) 107866056
chr1 209827266 209828505 ZNF274 GTRD no Bone Marrow (K562) 107866057
chr1 209827271 209828492 ZNF274 GTRD no Bone Marrow (K562) 107866058
chr1 209827271 209828494 ZNF274 GTRD no Bone Marrow (K562) 107866059
chr1 209827277 209828517 ZNF274 GTRD no Bone Marrow (K562) 107866060
chr1 209827281 209828615 ZBTB33 GTRD no Lung (A549) 107866061
chr1 209827286 209828332 ZNF274 GTRD no Bone Marrow (K562) 107866062
chr1 209827300 209828224 ZNF274 GTRD no Bone Marrow (K562) 107866063
chr1 209827301 209827637 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107866064
chr1 209827304 209828495 ZNF274 GTRD no Bone Marrow (K562) 107866065
chr1 209827308 209828650 ZNF143 GTRD no Epithelial (MCF-7) 107866066
chr1 209827312 209828345 ZNF274 GTRD no Bone Marrow (K562) 107866067
chr1 209827321 209827597 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107866068
chr1 209827328 209828684 ZNF143 GTRD no Epithelial (MCF-7) 107866069
chr1 209827329 209828468 ZNF274 GTRD no Bone Marrow (K562) 107866070
chr1 209827330 209828326 ZNF274 GTRD no Bone Marrow (K562) 107866071
chr1 209827336 209828563 ZNF274 GTRD no Liver (HepG2) 107866072
chr1 209827337 209827561 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107866073
chr1 209827337 209827601 CEBPB UCSC Txn Factor no Conserved 107866074
chr1 209827342 209828408 ZNF274 GTRD no Blood (GM12878) 107866075
chr1 209827345 209827601 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107866076
chr1 209827348 209828408 ZNF274 GTRD no Blood (GM12878) 107866077
chr1 209827363 209828471 ZNF274 GTRD no Liver (HepG2) 107866078
chr1 209827364 209828573 ZNF274 GTRD no Bone Marrow (K562) 107866079
chr1 209827365 209828321 ZNF274 GTRD no Bone Marrow (K562) 107866080
chr1 209827365 209828499 ZNF274 GTRD no Bone Marrow (K562) 107866081
chr1 209827372 209828307 ZNF274 GTRD no Bone Marrow (K562) 107866082
chr1 209827373 209828764 ZNF274 GTRD no Cervix (HeLa-S3) 21375554
chr1 209827373 209828764 ZNF274 GTRD no Cervix (HeLa-S3) 107866083
chr1 209827378 209828524 ZNF274 GTRD no Bone Marrow (K562) 107866084
chr1 209827379 209828522 ZNF274 GTRD no Bone Marrow (K562) 107866085
chr1 209827381 209828511 ZBTB33 GTRD no Lung (A549) 107866086
chr1 209827381 209828518 ZNF274 GTRD no Bone Marrow (K562) 107866087
chr1 209827383 209828441 ZNF274 GTRD no Bone Marrow (K562) 107866088
chr1 209827383 209828764 ZNF274 GTRD no Cervix (HeLa-S3) 21375555
chr1 209827383 209828764 ZNF274 GTRD no Cervix (HeLa-S3) 107866089
chr1 209827386 209828554 ZNF274 GTRD no Blood (GM12878) 107866090
chr1 209827388 209828140 ZNF274 GTRD no Bone Marrow (K562) 107866091
chr1 209827388 209828591 ZNF274 GTRD no Cervix (HeLa-S3) 21375556
chr1 209827388 209828591 ZNF274 GTRD no Cervix (HeLa-S3) 107866092
chr1 209827390 209828279 ZNF274 GTRD no Blood (GM12878) 107866093
chr1 209827390 209828565 ZNF274 GTRD no Liver (HepG2) 107866094
chr1 209827390 209828619 ZNF274 GTRD no Blood (GM12878) 107866095
chr1 209827391 209828609 ZBTB33 GTRD no Lung (A549) 107866096
chr1 209827392 209827868 GATA3 GTRD no Thymus 107866097
chr1 209827392 209828400 ZNF274 GTRD no Liver (HepG2) 107866098
chr1 209827393 209828245 ZNF274 GTRD no Bone Marrow (K562) 107866099
chr1 209827394 209828131 ZNF274 GTRD no Bone Marrow (K562) 107866100
chr1 209827394 209828265 ZNF274 GTRD no Bone Marrow (K562) 107866101
chr1 209827394 209828506 ZNF274 GTRD no Cervix (HeLa-S3) 21375557
chr1 209827394 209828506 ZNF274 GTRD no Cervix (HeLa-S3) 107866102
chr1 209827397 209828495 ZBTB33 GTRD no Lung (A549) 107866103
chr1 209827398 209828566 ZNF274 GTRD no Blood (GM12878) 107866104
chr1 209827408 209828479 TCF7L2 GTRD no Colon (HCT116) 107866105
chr1 209827412 209827702 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107866106
chr1 209827415 209828495 ZBTB33 GTRD no Lung (A549) 107866107
chr1 209827415 209828521 ZBTB33 GTRD no Lung (A549) 107866108
chr1 209827417 209828432 ZNF274 GTRD no Bone Marrow (K562) 107866109
chr1 209827420 209828721 ZNF274 GTRD no Bone Marrow (K562) 107866110
chr1 209827422 209828273 ZNF143 GTRD no Epithelial (MCF-7) 107866111
chr1 209827422 209828636 ZNF274 GTRD no Liver (HepG2) 107866112
chr1 209827424 209829134 ZNF274 GTRD no Blood (GM12878) 107866113
chr1 209827424 209829134 ZNF274 GTRD no Blood (GM12878) 107866114
chr1 209827427 209828554 STAT3 GTRD no Blood (OCI-LY7) 107866115
chr1 209827430 209828482 TCF7L2 GTRD no Colon (HCT116) 107866116
chr1 209827433 209828446 ZBTB33 GTRD no Lung (A549) 107866117
chr1 209827437 209828511 ZNF274 GTRD no Bone Marrow (K562) 107866118
chr1 209827438 209828587 ZNF274 GTRD no Liver (HepG2) 107866119
chr1 209827439 209828280 ZNF274 GTRD no Liver (HepG2) 107866120
chr1 209827440 209828368 ZNF274 GTRD no Bone Marrow (K562) 107866121
chr1 209827440 209828460 ZNF274 GTRD no Bone Marrow (K562) 107866122
chr1 209827440 209828520 ZNF274 GTRD no Blood (GM12878) 107866123
chr1 209827446 209828448 ZBTB33 GTRD no Lung (A549) 107866124
chr1 209827446 209828528 ZNF274 GTRD no Bone Marrow (K562) 107866125
chr1 209827447 209828208 ZNF274 GTRD no Bone Marrow (K562) 107866126
chr1 209827448 209828594 ZNF274 GTRD no Blood (GM12878) 107866127
chr1 209827449 209828536 ZBTB33 GTRD no Lung (A549) 107866128
chr1 209827450 209828390 ZNF274 GTRD no Blood (GM12878) 107866129
chr1 209827450 209828431 ZNF274 GTRD no Blood (GM12878) 107866130
chr1 209827451 209828483 ZBTB33 GTRD no Lung (A549) 107866131
chr1 209827452 209828496 ZNF274 GTRD no Cervix (HeLa-S3) 21375558
chr1 209827452 209828496 ZNF274 GTRD no Cervix (HeLa-S3) 107866132
chr1 209827453 209828511 ZNF274 GTRD no Blood (GM12878) 107866133
chr1 209827453 209828555 ZNF274 GTRD no Blood (GM12878) 107866134
chr1 209827458 209828565 ZNF274 GTRD no Bone Marrow (K562) 107866135
chr1 209827460 209828579 ZNF274 GTRD no Blood (GM12878) 107866136
chr1 209827461 209828520 ZNF274 GTRD no Blood (GM12878) 107866137
chr1 209827461 209828544 ZNF274 GTRD no Liver (HepG2) 107866138
chr1 209827462 209828514 ZNF274 GTRD no Bone Marrow (K562) 107866139
chr1 209827462 209828585 ZNF274 GTRD no Blood (GM12878) 107866140
chr1 209827465 209828193 ZNF274 GTRD no Bone Marrow (K562) 107866141
chr1 209827465 209828518 ZNF274 GTRD no Bone Marrow (K562) 107866142
chr1 209827465 209828583 ZNF274 GTRD no Bone Marrow (K562) 107866143
chr1 209827466 209828239 ZNF274 GTRD no Bone Marrow (K562) 107866144
chr1 209827468 209828392 ZNF274 GTRD no Blood (GM12878) 107866145
chr1 209827470 209827996 ZNF274 GTRD no Bone Marrow (K562) 107866146
chr1 209827470 209828460 ZNF274 GTRD no Blood (GM12878) 107866147
chr1 209827471 209827492 ZNF263 JASPAR yes 34987926
chr1 209827471 209827492 ZNF263 JASPAR yes 118449114
chr1 209827472 209828064 ZNF274 GTRD no Bone Marrow (K562) 107866148
chr1 209827473 209828096 ZNF274 GTRD no Bone Marrow (K562) 107866149
chr1 209827473 209828562 ZNF274 GTRD no Blood (GM12878) 107866150
chr1 209827475 209828149 ZNF274 GTRD no Bone Marrow (K562) 107866151
chr1 209827475 209828319 ZBTB33 GTRD no Lung (A549) 107866152
chr1 209827475 209828485 ZNF274 GTRD no Bone Marrow (K562) 107866153
chr1 209827475 209828513 ZNF274 GTRD no Blood (GM12878) 107866154
chr1 209827477 209828149 ZNF274 GTRD no Bone Marrow (K562) 107866155
chr1 209827478 209828417 ZNF274 GTRD no Bone Marrow (K562) 107866156
chr1 209827478 209828455 ZNF274 GTRD no Liver (HepG2) 107866157
chr1 209827478 209828461 ZBTB33 GTRD no Lung (A549) 107866158
chr1 209827478 209828593 ZNF274 GTRD no Bone Marrow (K562) 107866159
chr1 209827480 209828013 ZNF274 GTRD no Bone Marrow (K562) 107866160
chr1 209827480 209828392 ZNF274 GTRD no Blood (GM12878) 107866161
chr1 209827483 209828226 CTCF GTRD no Spleen 107866162
chr1 209827483 209828536 ZNF274 GTRD no Bone Marrow (K562) 107866163
chr1 209827484 209828390 ZBTB33 GTRD no Brain (SK-N-SH) 107866164
chr1 209827485 209828396 ZNF274 GTRD no Liver (HepG2) 107866165
chr1 209827485 209828562 ZBTB33 GTRD no Lung (A549) 107866166
chr1 209827486 209827490 LFA1 TRANSFAC yes 34987927
chr1 209827486 209827490 LFA1 TRANSFAC yes 118449115
chr1 209827486 209828219 ZNF274 GTRD no Bone Marrow (K562) 107866167
chr1 209827487 209827496 SNAI2 JASPAR yes 34987928
chr1 209827487 209827496 SNAI2 JASPAR yes 118449116
chr1 209827487 209827497 ID4 JASPAR yes 34987929
chr1 209827487 209827497 NHLH1 JASPAR yes 34987930
chr1 209827487 209827497 TCF3 JASPAR yes 34987931
chr1 209827487 209827497 TCF4 JASPAR yes 34987932
chr1 209827487 209827497 ID4 JASPAR yes 118449117
chr1 209827487 209827497 NHLH1 JASPAR yes 118449118
chr1 209827487 209827497 TCF3 JASPAR yes 118449119
chr1 209827487 209827497 TCF4 JASPAR yes 118449120
chr1 209827487 209828166 ZNF274 GTRD no Liver (HepG2) 107866168
chr1 209827487 209828288 ZNF274 GTRD no Bone Marrow (K562) 107866169
chr1 209827487 209828419 ZNF143 GTRD no Epithelial (MCF-7) 107866170
chr1 209827488 209828571 ZNF274 GTRD no Cervix (HeLa-S3) 21375559
chr1 209827488 209828571 ZNF274 GTRD no Cervix (HeLa-S3) 107866171
chr1 209827489 209827498 ZEB1 JASPAR yes 34987933
chr1 209827489 209827498 ZEB1 JASPAR yes 118449121
chr1 209827489 209828351 ZNF274 GTRD no Bone Marrow (K562) 107866172
Genes associated with rs1534962[chr1:209827489], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 209788215 209825811 - LAMB3 ENSG00000196878.8 209825811 1678 Esophagus 0.0269974 1806
chr1 209788215 209825811 - LAMB3 ENSG00000196878.8 209825811 1678 Pancreas 0.000951639 1806
chr1 209788215 209825811 - LAMB3 ENSG00000196878.8 209825811 1678 Lung 1.02262e-07 1806