EnhancerDB
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  3. rs1638542[chr19:3556341]
Enhancers that have rs1638542[chr19:3556341]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3550863 3556635 enh4966
Blood (OCI-LY7) Blood (T-cell) Thymus Blood (Karpas-422)
Transcript factors that have rs1638542[chr19:3556341]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3554038 3559185 ZNF274 GTRD no Cervix (HeLa-S3) 21839629
chr19 3554038 3559185 ZNF274 GTRD no Cervix (HeLa-S3) 108367822
chr19 3554768 3558480 TCF7L2 GTRD no Colon (HCT116) 21839631
chr19 3554768 3558480 TCF7L2 GTRD no Colon (HCT116) 108367826
chr19 3555225 3558696 ZNF274 GTRD no Cervix (HeLa-S3) 21839632
chr19 3555225 3558696 ZNF274 GTRD no Cervix (HeLa-S3) 108367827
chr19 3555301 3556455 ZNF274 GTRD no Cervix (HeLa-S3) 108367829
chr19 3555316 3558525 TCF7L2 GTRD no Colon (HCT116) 21839633
chr19 3555316 3558525 TCF7L2 GTRD no Colon (HCT116) 108367830
chr19 3555319 3558510 ZNF274 GTRD no Cervix (HeLa-S3) 21839634
chr19 3555319 3558510 ZNF274 GTRD no Cervix (HeLa-S3) 108367831
chr19 3555391 3556766 ZNF274 GTRD no Cervix (HeLa-S3) 108367833
chr19 3555402 3558474 POLR2A UCSC Txn Factor no Conserved 108367834
chr19 3556327 3556342 TFAP2A JASPAR yes 112139207
chr19 3556329 3556344 TFAP2C JASPAR yes 112139208
chr19 3556330 3556342 TFAP2A JASPAR yes 112139209
chr19 3556330 3556342 TFAP2B JASPAR yes 112139210
chr19 3556330 3556342 TFAP2C JASPAR yes 112139211
chr19 3556332 3556341 TFAP2A JASPAR yes 112139213
Genes associated with rs1638542[chr19:3556341], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More