EnhancerDB
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  3. rs188139642[chr16:1090643]
Enhancers that have rs188139642[chr16:1090643]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 1090285 1100823 enh75745
Muscle (A673) Colon (HCT116) Pancreas (Panc1) Brain (SK-N-MC)
Transcript factors that have rs188139642[chr16:1090643]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 1087927 1092615 TCF7L2 GTRD no Colon (HCT116) 21684160
chr16 1087981 1092562 TCF7L2 GTRD no Colon (HCT116) 21684161
chr16 1087987 1092808 TCF7L2 GTRD no Colon (HCT116) 21684162
chr16 1088253 1092332 TCF7L2 GTRD no Colon (HCT116) 21684163
chr16 1088383 1092492 TCF7L2 GTRD no Colon (HCT116) 21684164
chr16 1088611 1091730 TCF7L2 GTRD no Colon (HCT116) 21684165
chr16 1089031 1092345 TCF7L2 GTRD no Colon (HCT116) 21684166
chr16 1089068 1092487 TCF7L2 GTRD no Colon (HCT116) 21684167
chr16 1089340 1091769 TCF7L2 GTRD no Colon (HCT116) 21684168
chr16 1089361 1092048 TCF7L2 GTRD no Colon (HCT116) 21684169
chr16 1089446 1092583 TCF7L2 GTRD no Colon (HCT116) 21684170
chr16 1089503 1091795 TCF7L2 GTRD no Colon (HCT116) 21684171
chr16 1089543 1092451 TCF7L2 GTRD no Colon (HCT116) 21684172
chr16 1089651 1090801 TCF7L2 GTRD no Colon (HCT116) 21684173
chr16 1089704 1092637 TCF7L2 GTRD no Colon (HCT116) 21684174
chr16 1090634 1090651 RARA JASPAR yes 9133402
Genes associated with rs188139642[chr16:1090643], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More