EnhancerDB
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  3. rs190516874[chr1:172838503]
Enhancers that have rs190516874[chr1:172838503]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172834705 172846575 enh85986
Colon (HCT116) Blood (T-cell) Lung (PC-9)
Transcript factors that have rs190516874[chr1:172838503]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172838041 172839241 TCF7L2 GTRD no Colon (HCT116) 21350347
chr1 172838080 172839259 TCF7L2 GTRD no Colon (HCT116) 21350348
chr1 172838120 172839201 TCF7L2 GTRD no Colon (HCT116) 21350349
chr1 172838163 172839137 TCF7L2 GTRD no Colon (HCT116) 21350350
chr1 172838233 172839046 TCF7L2 GTRD no Colon (HCT116) 21350351
chr1 172838244 172839130 TCF7L2 GTRD no Colon (HCT116) 21350352
chr1 172838261 172839192 TCF7L2 GTRD no Colon (HCT116) 21350353
chr1 172838304 172838710 TCF7L2 GTRD no Colon (HCT116) 21350354
chr1 172838347 172838919 TCF7L2 GTRD no Colon (HCT116) 21350355
chr1 172838434 172838870 TCF7L2 GTRD no Colon (HCT116) 21350356
chr1 172838488 172838509 IRF1 JASPAR yes 33159245
chr1 172838492 172838507 PRDM1 JASPAR yes 33159246
chr1 172838494 172838515 IRF1 JASPAR yes 33159247
Genes associated with rs190516874[chr1:172838503], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More