EnhancerDB
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Enhancers that have rs196936[chr17:62138489]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62132205 62140819 enh62639
Esophagus Prostate (PC-3) Lung (PC-9)
Transcript factors that have rs196936[chr17:62138489]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62135185 62138817 ZNF143 GTRD no Epithelial (MCF-7) 108282053
chr17 62135396 62138804 ZNF143 GTRD no Epithelial (MCF-7) 108282054
chr17 62136245 62140183 ZNF143 GTRD no Epithelial (MCF-7) 108282055
chr17 62136265 62140706 ZNF143 GTRD no Epithelial (MCF-7) 108282056
chr17 62136265 62140706 ZNF143 GTRD no Epithelial (MCF-7) 108282057
chr17 62136311 62140209 ZNF143 GTRD no Epithelial (MCF-7) 108282058
chr17 62136854 62140730 TCF7L2 GTRD no Colon (HCT116) 108282059
chr17 62136854 62140730 TCF7L2 GTRD no Colon (HCT116) 108282060
chr17 62136991 62140449 TCF7L2 GTRD no Colon (HCT116) 108282061
chr17 62136991 62140449 TCF7L2 GTRD no Colon (HCT116) 108282062
chr17 62138257 62138759 ZNF274 GTRD no Bone Marrow (K562) 108282063
chr17 62138261 62138857 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108282064
chr17 62138293 62139153 ZBTB33 GTRD no Brain (SK-N-SH) 108282065
chr17 62138350 62139078 ZBTB33 GTRD no Brain (SK-N-SH) 108282066
chr17 62138455 62138810 ZNF274 GTRD no Blood (GM12878) 108282067
chr17 62138457 62139053 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108282068
Genes associated with rs196936[chr17:62138489], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 61850963 61896677 + DDX42 ENSG00000198231.8 61850963 241812 Ovary 0.0465112 16144