EnhancerDB
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  3. rs4258620[chr16:27179325]
Enhancers that have rs4258620[chr16:27179325]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 27178861 27194637 enh31749
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Astrocyte Blood (OCI-LY7) Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Spleen Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs4258620[chr16:27179325]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 27179030 27180256 ZNF274 GTRD no Cervix (HeLa-S3) 21700453
chr16 27179071 27180223 ZNF143 GTRD no Epithelial (MCF-7) 21700454
chr16 27179091 27179969 ZNF143 GTRD no Epithelial (MCF-7) 21700455
chr16 27179093 27180120 ZNF143 GTRD no Epithelial (MCF-7) 21700456
chr16 27179106 27180001 ZNF143 GTRD no Epithelial (MCF-7) 21700457
chr16 27179112 27180128 ZNF143 GTRD no Epithelial (MCF-7) 21700458
chr16 27179117 27180047 ZNF143 GTRD no Epithelial (MCF-7) 21700459
chr16 27179117 27180231 ZNF274 GTRD no Cervix (HeLa-S3) 21700460
chr16 27179123 27179857 ZNF143 GTRD no Epithelial (MCF-7) 21700461
chr16 27179124 27180040 ZNF143 GTRD no Epithelial (MCF-7) 21700462
chr16 27179128 27180138 ZNF143 GTRD no Epithelial (MCF-7) 21700463
chr16 27179150 27180076 ZNF274 GTRD no Cervix (HeLa-S3) 21700464
chr16 27179197 27180133 TCF7L2 GTRD no Colon (HCT116) 21700465
chr16 27179214 27179896 TCF7L2 GTRD no Colon (HCT116) 21700466
chr16 27179308 27179840 TCF7L2 GTRD no Colon (HCT116) 21700467
chr16 27179322 27179338 T JASPAR yes 10173903
Genes associated with rs4258620[chr16:27179325], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More