EnhancerDB
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  3. rs539672085[chr1:236068023]
Enhancers that have rs539672085[chr1:236068023]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 236062005 236089295 enh12805
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs539672085[chr1:236068023]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 236067840 236068418 ZBTB33 GTRD no Lung (A549) 21403824
chr1 236067860 236068303 ZBTB33 GTRD no Brain (SK-N-SH) 21403825
chr1 236068010 236068024 PLAG1 JASPAR yes 36386006
chr1 236068011 236068322 ZBTB33 GTRD no Lung (A549) 21403826
chr1 236068018 236068032 ZIC1 JASPAR yes 36386007
chr1 236068018 236068033 ZIC3 JASPAR yes 36386008
chr1 236068018 236068033 ZIC4 JASPAR yes 36386009
Genes associated with rs539672085[chr1:236068023], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More