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- rs539743304[chr12:52630006]
Enhancers that have rs539743304[chr12:52630006]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr12 |
52629345 |
52635215 |
enh80195 |
|
|
| chr12 |
52629756 |
52630207 |
vista13471 |
|
|
Transcript factors that have rs539743304[chr12:52630006]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr12
|
52628398
|
52633205
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108033822
|
|
|
chr12
|
52629544
|
52633904
|
POLR2A
|
UCSC Txn Factor
|
no
|
Conserved
|
108033824
|
|
|
chr12
|
52629607
|
52630083
|
ZBTB33
|
ENCODE Uniform TFBS
|
no
|
Lung (A549)
|
108033825
|
|
|
chr12
|
52629672
|
52630242
|
ZNF217
|
ENCODE Uniform TFBS
|
no
|
Epithelial (MCF-7)
|
108033826
|
|
|
chr12
|
52629721
|
52630105
|
ZBTB33
|
ENCODE Uniform TFBS
|
no
|
Lung (A549)
|
108033827
|
|
|
chr12
|
52629770
|
52630126
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Cervix (HeLa-S3)
|
108033828
|
|
|
chr12
|
52629780
|
52630035
|
ZZZ3
|
ENCODE Uniform TFBS
|
no
|
Cervix (HeLa-S3)
|
108033829
|
|
|
chr12
|
52629856
|
52630112
|
FOXA1
|
UCSC Txn Factor
|
no
|
Conserved
|
108033831
|
|
|
chr12
|
52629876
|
52630400
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108033832
|
|
|
chr12
|
52629939
|
52630249
|
ZNF217
|
ENCODE Uniform TFBS
|
no
|
Epithelial (MCF-7)
|
108033833
|
|
|
chr12
|
52629986
|
52630006
|
RREB1
|
JASPAR
|
yes
|
|
82407028
|
|
|
chr12
|
52629986
|
52630006
|
RREB1
|
JASPAR
|
yes
|
|
120930865
|
|
|
chr12
|
52629998
|
52630013
|
TFAP2A
|
JASPAR
|
yes
|
|
82407029
|
|
|
chr12
|
52629998
|
52630013
|
TFAP2A
|
JASPAR
|
yes
|
|
120930866
|
|
|
chr12
|
52630000
|
52630014
|
EBF1
|
JASPAR
|
yes
|
|
82407030
|
|
|
chr12
|
52630000
|
52630014
|
EBF1
|
JASPAR
|
yes
|
|
120930867
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2A
|
JASPAR
|
yes
|
|
82407031
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2B
|
JASPAR
|
yes
|
|
82407032
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2C
|
JASPAR
|
yes
|
|
82407033
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2A
|
JASPAR
|
yes
|
|
120930868
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2B
|
JASPAR
|
yes
|
|
120930869
|
|
|
chr12
|
52630001
|
52630013
|
TFAP2C
|
JASPAR
|
yes
|
|
120930870
|
|
|
chr12
|
52630001
|
52630016
|
TFAP2A
|
JASPAR
|
yes
|
|
82407034
|
|
|
chr12
|
52630001
|
52630016
|
TFAP2C
|
JASPAR
|
yes
|
|
82407035
|
|
|
chr12
|
52630001
|
52630016
|
TFAP2A
|
JASPAR
|
yes
|
|
120930871
|
|
|
chr12
|
52630001
|
52630016
|
TFAP2C
|
JASPAR
|
yes
|
|
120930872
|
|
|
chr12
|
52630003
|
52630012
|
TFAP2A
|
JASPAR
|
yes
|
|
82407036
|
|
|
chr12
|
52630003
|
52630012
|
TFAP2A
|
JASPAR
|
yes
|
|
120930873
|
|
|
chr12
|
52630005
|
52630020
|
NR2C2
|
JASPAR
|
yes
|
|
82407037
|
|
|
chr12
|
52630005
|
52630020
|
NR2C2
|
JASPAR
|
yes
|
|
120930874
|
|
|
chr12
|
52630006
|
52630020
|
RXRB
|
JASPAR
|
yes
|
|
82407038
|
|
|
chr12
|
52630006
|
52630020
|
RXRG
|
JASPAR
|
yes
|
|
82407039
|
|
|
chr12
|
52630006
|
52630020
|
RXRB
|
JASPAR
|
yes
|
|
120930875
|
|
|
chr12
|
52630006
|
52630020
|
RXRG
|
JASPAR
|
yes
|
|
120930876
|
|
Genes associated with rs539743304[chr12:52630006], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |