EnhancerDB
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  3. rs539846[chr15:40397936]
Enhancers that have rs539846[chr15:40397936]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 40386275 40399315 enh3538
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539846[chr15:40397936]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 40397544 40398151 RELA UCSC Txn Factor no Conserved 108134317
chr15 40397612 40398599 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21650434
chr15 40397612 40398599 POLR2A UCSC Txn Factor no Conserved 108134318
chr15 40397612 40398599 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108134319
chr15 40397711 40398095 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21650435
chr15 40397711 40398095 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108134320
chr15 40397928 40397943 PRDM1 JASPAR yes 22930164
chr15 40397929 40397940 E2F6 JASPAR yes 22930166
chr15 40397932 40397945 NFKB2 JASPAR yes 22930167
chr15 40397933 40397943 NFKB1 JASPAR yes 22930168
chr15 40397933 40397944 NFKB1 JASPAR yes 22930169
chr15 40397934 40397944 NFKB1 JASPAR yes 22930170
chr15 40397934 40397944 RELA JASPAR yes 22930171
chr15 40397934 40397944 REL JASPAR yes 22930172
Genes associated with rs539846[chr15:40397936], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More