EnhancerDB
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  3. rs540389561[chr5:149873078]
Enhancers that have rs540389561[chr5:149873078]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 149864505 149874560 enh8800
Prostate (PC-3) Prostate (RWPE1) Lung (PC-9) Esophagus Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Breast Pancreas (Panc1) Muscle (Myotube) Heart
Transcript factors that have rs540389561[chr5:149873078]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 149873068 149873083 HNF1A JASPAR yes 66884459
chr5 149873071 149873081 POU6F2 JASPAR yes 66884460
chr5 149873072 149873083 HOXA10 JASPAR yes 66884461
chr5 149873072 149873083 HOXC11 JASPAR yes 66884462
chr5 149873072 149873083 HOXC12 JASPAR yes 66884463
chr5 149873072 149873083 HOXD12 JASPAR yes 66884464
chr5 149873073 149873083 HOXC10 JASPAR yes 66884465
chr5 149873073 149873083 HOXD11 JASPAR yes 66884466
chr5 149873075 149873079 YY1 TRANSFAC yes 66884467
chr5 149873075 149873096 IRF1 JASPAR yes 66884468
chr5 149873078 149873084 TBP TRANSFAC yes 66884469
Genes associated with rs540389561[chr5:149873078], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More