EnhancerDB
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  3. rs540913990[chr6:135229431]
Enhancers that have rs540913990[chr6:135229431]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 135227245 135235255 enh23636
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Placenta Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Uterus Thymus
Transcript factors that have rs540913990[chr6:135229431]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 135229422 135229437 TFAP2C JASPAR yes 105492072
chr6 135229424 135229438 EBF1 JASPAR yes 105492073
chr6 135229424 135229438 GLIS2 JASPAR yes 105492074
chr6 135229424 135229438 GLIS3 JASPAR yes 105492075
chr6 135229425 135229436 EBF1 JASPAR yes 105492076
chr6 135229426 135229441 RFX5 JASPAR yes 105492077
Genes associated with rs540913990[chr6:135229431], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More