EnhancerDB
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  3. rs542063771[chr1:108542199]
Enhancers that have rs542063771[chr1:108542199]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 108541221 108545695 enh49928
Brain (SK-N-SH) Large Intestine Lung (PC-9)
Transcript factors that have rs542063771[chr1:108542199]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 108542193 108542203 ALX3 JASPAR yes 31375304
chr1 108542193 108542203 EMX1 JASPAR yes 31375305
chr1 108542193 108542203 GSX1 JASPAR yes 31375306
chr1 108542193 108542203 GSX2 JASPAR yes 31375307
chr1 108542193 108542203 HOXB2 JASPAR yes 31375308
chr1 108542193 108542203 HOXB3 JASPAR yes 31375309
chr1 108542193 108542203 LBX2 JASPAR yes 31375310
chr1 108542193 108542203 LHX2 JASPAR yes 31375311
chr1 108542193 108542203 MEOX1 JASPAR yes 31375312
chr1 108542193 108542203 MEOX2 JASPAR yes 31375313
chr1 108542193 108542203 MIXL1 JASPAR yes 31375314
chr1 108542193 108542203 MNX1 JASPAR yes 31375315
chr1 108542193 108542203 NOTO JASPAR yes 31375316
chr1 108542194 108542202 BSX JASPAR yes 31375317
chr1 108542194 108542202 DLX6 JASPAR yes 31375318
chr1 108542194 108542202 EN1 JASPAR yes 31375319
chr1 108542194 108542202 ISX JASPAR yes 31375320
chr1 108542194 108542202 LBX1 JASPAR yes 31375321
chr1 108542194 108542202 LHX9 JASPAR yes 31375322
chr1 108542194 108542202 LMX1A JASPAR yes 31375323
chr1 108542194 108542202 LMX1B JASPAR yes 31375324
chr1 108542194 108542202 NKX6-1 JASPAR yes 31375325
chr1 108542194 108542202 NKX6-2 JASPAR yes 31375326
chr1 108542194 108542202 PAX4 JASPAR yes 31375327
chr1 108542194 108542202 PDX1 JASPAR yes 31375328
chr1 108542194 108542202 PRRX1 JASPAR yes 31375329
chr1 108542194 108542202 RAX2 JASPAR yes 31375330
chr1 108542194 108542202 SHOX JASPAR yes 31375331
chr1 108542194 108542202 UNCX JASPAR yes 31375332
chr1 108542194 108542202 VAX1 JASPAR yes 31375333
chr1 108542194 108542202 VAX2 JASPAR yes 31375334
chr1 108542194 108542202 VSX1 JASPAR yes 31375335
chr1 108542194 108542202 VSX2 JASPAR yes 31375336
chr1 108542199 108542206 NKX3-1 JASPAR yes 31375337
Genes associated with rs542063771[chr1:108542199], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More