EnhancerDB
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  3. rs542555559[chr1:169878677]
Enhancers that have rs542555559[chr1:169878677]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 169872065 169887325 enh79248
Prostate (PC-3) Prostate (RWPE1) Bone (Osteoblast) Blood (GM12878) Peripheral Blood (MM.1S)
Transcript factors that have rs542555559[chr1:169878677]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 169878669 169878679 GSX2 JASPAR yes 33016782
chr1 169878669 169878679 HOXB2 JASPAR yes 33016783
chr1 169878669 169878679 HOXB3 JASPAR yes 33016784
chr1 169878669 169878679 MNX1 JASPAR yes 33016785
chr1 169878669 169878679 POU6F1 JASPAR yes 33016786
chr1 169878669 169878680 HOXA10 JASPAR yes 33016787
chr1 169878670 169878678 LMX1A JASPAR yes 33016788
chr1 169878670 169878678 LMX1B JASPAR yes 33016789
chr1 169878670 169878678 NKX6-1 JASPAR yes 33016790
chr1 169878670 169878678 NKX6-2 JASPAR yes 33016791
chr1 169878670 169878678 VAX1 JASPAR yes 33016792
chr1 169878670 169878678 VAX2 JASPAR yes 33016793
chr1 169878670 169878678 VSX1 JASPAR yes 33016794
chr1 169878670 169878678 VSX2 JASPAR yes 33016795
chr1 169878675 169878681 TBP TRANSFAC yes 33016796
Genes associated with rs542555559[chr1:169878677], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More