EnhancerDB
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  3. rs542778199[chr1:200050895]
Enhancers that have rs542778199[chr1:200050895]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200050544 200050911 vista4502
VISTA
Transcript factors that have rs542778199[chr1:200050895]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200050547 200050947 TCF7L2 GTRD no Colon (HCT116) 107854943
chr1 200050690 200050906 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107854945
chr1 200050888 200050902 SPIC JASPAR yes 118429707
chr1 200050889 200050910 IRF1 JASPAR yes 118429708
chr1 200050893 200050908 FOXP1 JASPAR yes 118429709
chr1 200050894 200050909 FOXP1 JASPAR yes 118429710
chr1 200050895 200050910 FOXP1 JASPAR yes 118429711
Genes associated with rs542778199[chr1:200050895], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More