EnhancerDB
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  3. rs550541566[chr1:2069204]
Enhancers that have rs550541566[chr1:2069204]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2056625 2074371 enh11419
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Astrocyte Bone (Osteoblast) Placenta Colon (HCT116) Thyroid Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs550541566[chr1:2069204]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2067890 2069905 TCF7L2 GTRD no Colon (HCT116) 107801807
chr1 2069188 2069208 PPARG JASPAR yes 26219108
chr1 2069194 2069209 NR2C2 JASPAR yes 26219109
chr1 2069196 2069206 SP1 JASPAR yes 26219110
chr1 2069196 2069217 ZNF263 JASPAR yes 26219111
chr1 2069197 2069217 RREB1 JASPAR yes 26219112
chr1 2069199 2069209 MZF1 JASPAR yes 26219113
chr1 2069199 2069220 ZNF263 JASPAR yes 26219114
chr1 2069201 2069211 SP1 JASPAR yes 26219115
chr1 2069201 2069221 RREB1 JASPAR yes 26219116
chr1 2069202 2069208 SP1 TRANSFAC yes 26219117
chr1 2069202 2069212 SP1 JASPAR yes 26219118
chr1 2069202 2069222 RREB1 JASPAR yes 26219119
chr1 2069203 2069213 ZNF740 JASPAR yes 26219120
Genes associated with rs550541566[chr1:2069204], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More