EnhancerDB
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  3. rs552476366[chr13:113377195]
Enhancers that have rs552476366[chr13:113377195]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr13 113356925 113401095 enh15512
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr13 113377120 113377559 vista17116
VISTA
Transcript factors that have rs552476366[chr13:113377195]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr13 113376680 113377306 SOX2 GTRD no Neural Stem Cells (H9) 21605752
chr13 113376680 113377306 SOX2 GTRD no Neural Stem Cells (H9) 108090488
chr13 113376859 113377281 SOX2 GTRD no Neural Stem Cells (H9) 21605753
chr13 113376859 113377281 SOX2 GTRD no Neural Stem Cells (H9) 108090489
chr13 113376873 113377287 SOX2 GTRD no Neural Stem Cells (H9) 21605754
chr13 113376873 113377287 SOX2 GTRD no Neural Stem Cells (H9) 108090490
chr13 113376969 113377268 SOX2 GTRD no Neural Stem Cells (H9) 21605755
chr13 113376969 113377268 SOX2 GTRD no Neural Stem Cells (H9) 108090491
chr13 113377033 113377629 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108090492
chr13 113377042 113377418 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21605756
chr13 113377042 113377418 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108090493
chr13 113377073 113377483 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108090494
chr13 113377131 113377297 SOX2 GTRD no Neural Stem Cells (H9) 21605757
chr13 113377131 113377297 SOX2 GTRD no Neural Stem Cells (H9) 108090495
chr13 113377161 113377691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21605758
chr13 113377161 113377691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108090496
chr13 113377163 113377407 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21605759
chr13 113377163 113377407 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108090497
chr13 113377164 113377528 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21605760
chr13 113377164 113377528 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108090498
chr13 113377165 113377681 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21605761
chr13 113377165 113377681 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108090499
chr13 113377173 113377513 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21605762
chr13 113377173 113377513 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108090500
chr13 113377190 113377200 ELK1 JASPAR yes 19345995
chr13 113377190 113377200 ELK1 JASPAR yes 60430245
chr13 113377192 113377512 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21605763
chr13 113377192 113377512 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108090501
chr13 113377194 113377200 ETS1 JASPAR yes 19345996
chr13 113377194 113377200 ETS1 JASPAR yes 60430246
Genes associated with rs552476366[chr13:113377195], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More