-
Home
- SNP
- rs55939178[chr17:62137930]
Enhancers that have rs55939178[chr17:62137930]
Back to top
| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr17 |
62132205 |
62140819 |
enh62639 |
|
|
Transcript factors that have rs55939178[chr17:62137930]
Back to top
| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr17
|
62135185
|
62138817
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282053
|
|
|
chr17
|
62135396
|
62138804
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282054
|
|
|
chr17
|
62136245
|
62140183
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282055
|
|
|
chr17
|
62136265
|
62140706
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282056
|
|
|
chr17
|
62136265
|
62140706
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282057
|
|
|
chr17
|
62136311
|
62140209
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108282058
|
|
|
chr17
|
62136854
|
62140730
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108282059
|
|
|
chr17
|
62136854
|
62140730
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108282060
|
|
|
chr17
|
62136991
|
62140449
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108282061
|
|
|
chr17
|
62136991
|
62140449
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108282062
|
|
Genes associated with rs55939178[chr17:62137930], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr17
|
61904512
|
61909379
|
+
|
PSMC5
|
ENSG00000087191.8
|
61904512
|
228551
|
Spleen
|
0.253779
|
16146
|
|
|
chr17
|
63133549
|
63223821
|
+
|
RGS9
|
ENSG00000108370.11
|
63133549
|
995619
|
Lung
|
0.254658
|
16166
|
|