EnhancerDB
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  3. rs559602252[chr19:6580234]
Enhancers that have rs559602252[chr19:6580234]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6566085 6582575 enh4988
Bone Marrow (K562) Cervix (HeLa-S3) Esophagus Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Spleen Blood (T-cell)
Transcript factors that have rs559602252[chr19:6580234]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6575988 6581396 ZNF274 GTRD no Blood (GM12878) 108378571
chr19 6575988 6581396 ZNF274 GTRD no Blood (GM12878) 108378572
chr19 6576640 6581025 ZNF274 GTRD no Blood (GM12878) 108378578
chr19 6576640 6581025 ZNF274 GTRD no Blood (GM12878) 108378579
chr19 6579381 6581351 ZNF274 GTRD no Blood (GM12878) 108378735
chr19 6579404 6581052 ZNF274 GTRD no Blood (GM12878) 108378737
chr19 6579409 6581234 ZNF274 GTRD no Blood (GM12878) 108378739
chr19 6579424 6580584 ZNF274 GTRD no Blood (GM12878) 108378740
chr19 6579429 6580640 ZNF274 GTRD no Blood (GM12878) 108378741
chr19 6579442 6580529 ZNF274 GTRD no Blood (GM12878) 108378742
chr19 6579539 6580975 ZNF274 GTRD no Cervix (HeLa-S3) 21845875
chr19 6579539 6580975 ZNF274 GTRD no Cervix (HeLa-S3) 108378744
chr19 6579717 6580860 ZNF274 GTRD no Cervix (HeLa-S3) 21845876
chr19 6579717 6580860 ZNF274 GTRD no Cervix (HeLa-S3) 108378748
chr19 6579782 6580346 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108378749
chr19 6579856 6581211 TCF7L2 GTRD no Colon (HCT116) 21845878
chr19 6579856 6581211 TCF7L2 GTRD no Colon (HCT116) 108378752
chr19 6579877 6581289 TCF7L2 GTRD no Colon (HCT116) 21845880
chr19 6579877 6581289 TCF7L2 GTRD no Colon (HCT116) 108378754
chr19 6579981 6580545 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108378758
chr19 6580030 6581163 TCF7L2 GTRD no Colon (HCT116) 21845881
chr19 6580040 6581021 ZNF274 GTRD no Cervix (HeLa-S3) 21845882
chr19 6580149 6580940 ZNF274 GTRD no Bone Marrow (K562) 21845883
chr19 6580181 6580809 ZNF274 GTRD no Bone Marrow (K562) 21845884
chr19 6580213 6580741 ZNF274 GTRD no Bone Marrow (K562) 21845885
chr19 6580216 6580842 ZNF274 GTRD no Bone Marrow (K562) 21845886
chr19 6580219 6580749 ZNF274 GTRD no Bone Marrow (K562) 21845887
chr19 6580221 6580236 MEF2C JASPAR yes 112278134
chr19 6580222 6580237 MEF2A JASPAR yes 112278135
chr19 6580223 6580235 MEF2A JASPAR yes 112278136
chr19 6580223 6580235 MEF2B JASPAR yes 112278137
chr19 6580223 6580235 MEF2D JASPAR yes 112278138
chr19 6580229 6580244 MEF2C JASPAR yes 112278139
chr19 6580229 6580250 IRF1 JASPAR yes 112278140
chr19 6580230 6580245 FOXP1 JASPAR yes 112278141
chr19 6580230 6580251 IRF1 JASPAR yes 112278142
chr19 6580231 6580246 FOXP1 JASPAR yes 112278143
chr19 6580232 6580247 FOXP1 JASPAR yes 112278144
chr19 6580232 6580253 IRF1 JASPAR yes 112278145
chr19 6580233 6580248 FOXP1 JASPAR yes 112278146
chr19 6580233 6580254 IRF1 JASPAR yes 112278147
chr19 6580234 6580249 FOXP1 JASPAR yes 112278148
chr19 6580234 6580255 IRF1 JASPAR yes 112278149
Genes associated with rs559602252[chr19:6580234], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More