EnhancerDB
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  3. rs56022428[chr1:204685860]
Enhancers that have rs56022428[chr1:204685860]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204671389 204688135 enh890
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Blood (OCI-LY7) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs56022428[chr1:204685860]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204683463 204686837 ZNF143 GTRD no Epithelial (MCF-7) 21371069
chr1 204683463 204686837 ZNF143 GTRD no Epithelial (MCF-7) 107860698
chr1 204683524 204686157 ZNF143 GTRD no Epithelial (MCF-7) 21371071
chr1 204683524 204686157 ZNF143 GTRD no Epithelial (MCF-7) 107860699
chr1 204683561 204686179 ZNF143 GTRD no Epithelial (MCF-7) 21371072
chr1 204683561 204686179 ZNF143 GTRD no Epithelial (MCF-7) 107860700
chr1 204683562 204686281 ZNF143 GTRD no Epithelial (MCF-7) 21371073
chr1 204683562 204686281 ZNF143 GTRD no Epithelial (MCF-7) 107860701
chr1 204683569 204686929 ZNF143 GTRD no Epithelial (MCF-7) 21371074
chr1 204683569 204686929 ZNF143 GTRD no Epithelial (MCF-7) 107860702
chr1 204683625 204686107 TCF7L2 GTRD no Colon (HCT116) 107860703
chr1 204683750 204686325 TCF7L2 GTRD no Colon (HCT116) 107860704
chr1 204683794 204686709 ZNF143 GTRD no Epithelial (MCF-7) 21371075
chr1 204683794 204686709 ZNF143 GTRD no Epithelial (MCF-7) 107860705
chr1 204683858 204686201 TCF7L2 GTRD no Colon (HCT116) 107860707
chr1 204684040 204686248 TCF7L2 GTRD no Colon (HCT116) 107860720
chr1 204684057 204686188 TCF7L2 GTRD no Colon (HCT116) 107860722
chr1 204684107 204686164 TCF7L2 GTRD no Colon (HCT116) 107860728
chr1 204684321 204686005 TCF7L2 GTRD no Colon (HCT116) 107860734
chr1 204684399 204686280 ZNF143 GTRD no Epithelial (MCF-7) 21371080
chr1 204684425 204686297 ZNF143 GTRD no Epithelial (MCF-7) 21371081
chr1 204684516 204685986 ZNF143 GTRD no Epithelial (MCF-7) 21371083
chr1 204684557 204686144 ZNF143 GTRD no Epithelial (MCF-7) 21371084
chr1 204684579 204686109 ZNF143 GTRD no Epithelial (MCF-7) 21371085
chr1 204684636 204686558 ZNF143 GTRD no Epithelial (MCF-7) 21371088
chr1 204684752 204685878 ZNF143 GTRD no Epithelial (MCF-7) 21371091
chr1 204685687 204686120 ZNF143 GTRD no Epithelial (MCF-7) 21371094
chr1 204685856 204685866 HOXA13 JASPAR yes 34723375
chr1 204685856 204685866 HOXB13 JASPAR yes 34723376
chr1 204685856 204685866 HOXD13 JASPAR yes 34723377
chr1 204685856 204685867 HOXA10 JASPAR yes 34723378
chr1 204685856 204685867 HOXD12 JASPAR yes 34723379
chr1 204685857 204685866 CDX1 JASPAR yes 34723380
chr1 204685857 204685868 CDX2 JASPAR yes 34723381
Genes associated with rs56022428[chr1:204685860], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More