EnhancerDB
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  3. rs562139700[chr13:113377041]
Enhancers that have rs562139700[chr13:113377041]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr13 113356925 113401095 enh15512
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs562139700[chr13:113377041]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr13 113376680 113377306 SOX2 GTRD no Neural Stem Cells (H9) 21605752
chr13 113376680 113377306 SOX2 GTRD no Neural Stem Cells (H9) 108090488
chr13 113376859 113377281 SOX2 GTRD no Neural Stem Cells (H9) 21605753
chr13 113376859 113377281 SOX2 GTRD no Neural Stem Cells (H9) 108090489
chr13 113376873 113377287 SOX2 GTRD no Neural Stem Cells (H9) 21605754
chr13 113376873 113377287 SOX2 GTRD no Neural Stem Cells (H9) 108090490
chr13 113376969 113377268 SOX2 GTRD no Neural Stem Cells (H9) 21605755
chr13 113376969 113377268 SOX2 GTRD no Neural Stem Cells (H9) 108090491
chr13 113377033 113377629 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108090492
Genes associated with rs562139700[chr13:113377041], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More